Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0598 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGAGACGACGGCTAGGTCTCGCCGGCTAACCGGCGATTTCCTCTGGCCGGATTTGAAGAAACCCAGTTCAGGGAAGCGCTTCTCGAAGCCCCGGAGGTCTGAGGTCATCGAATTGGACGACGATTTTGAAGCTGATTTCCAGGAATTTAAGGACGATTATGATATCGATGAGTTGGACTATGATGATGATTTGCTGGTCGATGTGAAGCCCTTTGCTTTCTCCTCCATCAACCCCTCTAAGCCTTCCAAGTCACTGTGTCGTGATAAAGGATCTGGAGCTCTAAAATCTCTGGAATTCAATGAGCAAGCTACCAAGTCTAAGAGAAAGAGGAAAAATCAGTATAGGGGAATCCGTCAGCGTCCATGGGGAAAATGGGCAGCTGAGATCCGGGACCCAAGAAAGGGTGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGTGGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAACTTCCCAGATGAGGCTTCAGGCACTTCCCCAAAACGTCTTAAGGCAAGTCTGAACTCTGTTCTGCCCTATGGGAACCAGAAAGTCGATGCTGGAAACAATCTGGAGGACTACTACTGTCCCCTGGGTCTGATGGAGCAGAAACCACTGGTTAATCAGTATGCTAACATGGGAGCCTTCCTTGGCAGTGGAGATGGGTTCACATCTCTTGCTCTATCTGATGATGGTACTCTTGCTTTTAGTTCGGATCAAGCAAGTAATTCATTAGAGCATTCAAATCTTGGATGGGGCGAACAGGGCCCAAAGACTCCTGACATCTCATCCATGCTTTCTGCTCCTGTGGAAGATGAATCTGGAGCTGTGAATAATGCAAACCAGAAGATAAACCTTTCTAACTCTCAGGGTGTGATATCTGTGGAAAATGATTCTGGAAAAACACTGTCCGAGGAACTTGCGGATATTGAATCCCAGTTGAAGTTCTTTCAGATGCCTTATCTCGAAGGAAGCTGGGATGATGCTTCAATAGAAACCTTGCTTAGTGGAAACACAACTCAGGAAGGTGGAAACCCAATGAACCTTTGGAGCTTTGATGACCTACCTTCCGTGGCAGGGGGAGTTTTCTGA 1164 0.4768 MCGGAIISDFIPAETTARSRRLTGDFLWPDLKKPSSGKRFSKPRRSEVIELDDDFEADFQEFKDDYDIDELDYDDDLLVDVKPFAFSSINPSKPSKSLCRDKGSGALKSLEFNEQATKSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDVEARRIRGKKAKVNFPDEASGTSPKRLKASLNSVLPYGNQKVDAGNNLEDYYCPLGLMEQKPLVNQYANMGAFLGSGDGFTSLALSDDGTLAFSSDQASNSLEHSNLGWGEQGPKTPDISSMLSAPVEDESGAVNNANQKINLSNSQGVISVENDSGKTLSEELADIESQLKFFQMPYLEGSWDDASIETLLSGNTTQEGGNPMNLWSFDDLPSVAGGVF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0598 387 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Glsi07g0598 387 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Glsi07g0598 387 PANTHER DNA-BINDING DOMAIN 102 287 IPR044808 GO:0003700|GO:0009873
Glsi07g0598 387 CDD AP2 126 184 IPR001471 GO:0003700|GO:0006355
Glsi07g0598 387 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Glsi07g0598 387 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Glsi07g0598 387 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Glsi07g0598 387 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Glsi07g0598 387 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Glsi07g0598 387 FunFam Ethylene-responsive transcription factor 2 125 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0598 Glsi-ChrGlsi07 5312378 5315110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0598 1 387 AP2-EREBP Transcription Factor Family AT3G14230 44.712 3.20e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi07g0598 AP2 3.4e-12 CL0081