Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0587 ATGAGAAATCAGAGAATGACGAAAAACAGGGTTTTCTCCTTCGTCTTCATAGTAGAAAACGAAGCTTTCCTTGATCAACCATGCCACGGCCTCTATAGTACTCGGCTGAAACTCTCCAGTTCAGCGTTCTGTTGCTCTCTCTCTCAGCGTGCGCTTCAGAGGCAGACTCATTCTCTGTTTGGAGCCATGGCTACCACCACCACCCCTGCTCCGCCACGCCATCTGTCGCAGAAGGAGGCTGACATCCAAATGATGTTGGCCGCCGAAGTCCATTTGGGTACAAAGAACTGTGATTTTCAAATGGAGCGATATGTTTTCAAGCGCCGAAATGATGGTATTTACATTATAAATCTTGGAAAAACATGGGAGAAGTTACAGATGGCTGCTAGAGTTATTGTTGCCATCGAGAACCCTCAGGATATTATTGTTCAGTCTGCCAGGCCCTATGGTCAGAGAGCAGTTCTTAAGTTTGCTCAGTACACTGGTGTGCATGCAATTGCGGGACGACACACTCCTGGTACATTCACTAATCAGCTCCAGACATCATACAACGAGCCTCGCCTTCTTATTCTAACTGATCCAAGAACAGATCATCAGCCCATTAAGGAAGCTGCCCTTGGAAATATACCAACAATTGCTTTTTGTGACACTGATTCTTCTATGCGGTATGTTGACATTGGGATTCCTGCCAATAACAAGGGAAAACATAGTATCGGTTGTCTCTTTTGGCTTCTAGCAAGGATGGTCCTCCAGATGCGGGGTACTATTCGACCTGGGCTTAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGGGAACCTGAGGAGGCGAAGCAACAAGAGGAAGACGAAGTACCTGCTGCCCCAGAGTATGCCATTACAGACTTTAATGCTGCTCCAATCGTTGGTGTGGCTGCTGATAGCCAGTGGCCCGCTGCAGTTGATCAACAATGGACTGAAGCTGTTCCACCGCCAATTCCAGCAGTTCCTGGTGTCAACTGGACCCCAGAAGCTGTTGCAGGAGATTGGGGTGAATCTGTACCAGCTCCACAAATTCCTGTTCCCGGTATTGAATCTGTTCCTGCTTCTGGCTGGGAATAA 1101 0.475 MRNQRMTKNRVFSFVFIVENEAFLDQPCHGLYSTRLKLSSSAFCCSLSQRALQRQTHSLFGAMATTTTPAPPRHLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGVHAIAGRHTPGTFTNQLQTSYNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSSMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEDEVPAAPEYAITDFNAAPIVGVAADSQWPAAVDQQWTEAVPPPIPAVPGVNWTPEAVAGDWGESVPAPQIPVPGIESVPASGWE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0587 366 CDD RPS2 85 251 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 Hamap 40S ribosomal protein SA [rps-0]. 69 313 IPR027498 GO:0003735|GO:0006412|GO:0015935
Glsi07g0587 366 PRINTS Ribosomal protein S2 signature 161 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 PRINTS Ribosomal protein S2 signature 112 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 PRINTS Ribosomal protein S2 signature 203 214 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 PRINTS Ribosomal protein S2 signature 224 238 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 PRINTS Ribosomal protein S2 signature 186 203 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 PRINTS Ribosomal protein S2 signature 82 100 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 ProSitePatterns Ribosomal protein S2 signature 2. 186 210 IPR018130 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 Gene3D - 81 286 - -
Glsi07g0587 366 ProSitePatterns Ribosomal protein S2 signature 1. 82 93 IPR018130 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 Pfam Ribosomal protein S2 182 249 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 Pfam Ribosomal protein S2 85 180 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi07g0587 366 NCBIfam 30S ribosomal protein S2 77 273 IPR005707 GO:0003735|GO:0006412|GO:0015935
Glsi07g0587 366 PANTHER 40S RIBOSOMAL PROTEIN SA 72 351 IPR005707 GO:0003735|GO:0006412|GO:0015935
Glsi07g0587 366 MobiDBLite consensus disorder prediction 339 366 - -
Glsi07g0587 366 SUPERFAMILY Ribosomal protein S2 77 267 IPR023591 -
Glsi07g0587 366 FunFam 40S ribosomal protein SA 81 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0587 Glsi-ChrGlsi07 5141009 5143558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0587 63 366 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 69.281 2.69e-150 423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0587 07 5141009 5143558 Glsi07g0587 07 5141009 5143558 ECH