Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi07g0573 | ATGGCTGATTCTTCTTTTGAGTTTGACTACTACTCCTCAAGCCGCCACCACCCACCAACCTACCCAACCCCAGTGAGTTCTCACAATGTGTCTCGGTCTTTCACAGCATCCAGCTCTCGAAGCAATCCCAATTCCAGAAGAGGCCGCCGGAGCAGCAGATTTCCGGCGACACCCATTGCTTCAGATGATGACCGTTCATGGCAAACAGAGGTTTCATGGCGATTTGAGGCCACTGGGTGGCGTGAGTACAGTAGAAACTTGGGCTCTGTTCTAACCCCATGGGCAGCTAGCCCATCTGATCGGAGCCGGGTGTTTCGTCAATCAGCCAATGACTATTACCTTTCTCGAACCAGTGGATTCAGAGGCTTCACAAACTCACAATGTGAACATTCAGGCTATGTCCCATCTAGGAGAGTTGAGCTTCAGAGCTATGTTGCTAGAGACAATGATCAGAGTTACTTTGATCAGCACAGCAAGTCTAATGGGTTCTCAAAATTGGATATCATCAAAGGAGGGTTCAGTAGAAAGACTAAAAATAGTCCATTGGCTGACGAAGATGAACTCAGCATCAAAGATTATAGCATAGCAGATGCCTCTTTTATCTCCAACGGCAGGCATGGTCATGATCTTGAACTATCATCCACCAAACATGGTAATAGTGATTATGTTAGGCATTATCTTGATCGTGGAATCAAATCAAATAGCCAACTATATGGAAGCCATGGTGGTGGATATAGTCACCATGACATTGACAAGGTTTCTGGATATGAAGATGGCGAGGAAGATATGGACGAGGATGATGTAGAGGCTCCAAGGTCAGTTGGACTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTTAGTACTTGTGATTTTGGGTTCTTTGGGGGCTCTCATAAATGGGGGATCACTTCCTTGGTATTCTTATCTTTTTGGAACCGTAGTCAATGCGATTTCTGATGAATCATCAAATGGTGACAAAACCCAGATGCTCAAGGACGTTGAGAAGGTATGCATATATATGACTGGGTTAGCTGCAACAGTCATGGTTGGAGCATATTTGGAGATCGCATGTTGGAAGTTGGTAGGGGAGCGATCTGCTCAAAGAATAAGAACTGAGTATTTAAGAGCGGTTCTTCGGCAGGACATTAGCTTTTTTGATACGGAGATAAGCACTGGTGATATTATGCATGGAATTGCAAGTGATGTTGCACAAATTCAAGAAGTCATGGGAGAGAAGATGGCTCACTTCATTCATCATGTATTCACGTTCATATGTGGGTACACAGTTGGGTTTCTAAGGTCATGGAAAGTCTCTCTGGTGGTACTCTCAGTCACCCCAGTGACCATGTTCTGTGGCATCGCTTACAAAGCTATTTATGGGGGTTTATCAGCAAAAGAGGAAGCTTCTTATATGAAAGCTGGTAGCATTGCAGAGCAAGCCATTAGTTCAATTAGGACAGTGTTTTCTTTTGTAGCAGAAAGCCAATTGGCTGCAAAATATTCTGAACTACTGGAAAAATCAGTCCCGGTTGGAGCGAAAATTGGTTTTGCCAAGGGTGCAGGCATGGGGATTATCTATTTAGTAACTTATTCAACATGGGCCTTGGCTTTCTGGTATGGCTCTATCTTAATTGACAGAAATGAGATTAAAGGAGGTGAGGCCATTGCTACTTTCTTTGGTGTCATGGTAGGGGGAAGAGGCTTGGCATTGGCACTTTCATATTTTGCGCAATTTGCACAAGGCACAGTTGCAGCAAGCCGTGTATTCGAAATCATTGATAGAATCCCTGAGATTGATCCCTACAGCCCTGAGGGAAGGAAGCTCTCCAGTGCTCGTGGAAGGATTGAGTTCAAAAATGTTTGTTTTGCATACCCTTCTCGTCCTGATGCTCTAATTCTTGATTCCCTTAAATTAGTAATTCCATCTTCAAGAACTTCAGCTCTGGTTGGTGCCAGTGGAGGGGGCAAGTCCACTATTTTTGCTCTCATGGAGAGGTTTTATGACCCTATTGAAGGGATAATAACCTTGGACGGTCATGATTTGAGGACACTGCAAGTCAAGTGGCTACGAGATCAAATAGGAATGGTGGGTCAGGAGCCAATTCTCTTTGCCACAACCATACTGGAAAATGTGATGATGGGGAAGGACAATGCCACTAGGAAAGAGGCAATTGCTGCTTGCATTGCTGCCGATGCCCACAGATTCATCTCTAGCCTACCCCTAGGCTATGACACACAGGTTGGAGACAAAGGTACCCGACTCTCAGGTGGTCAAAAGCAGCGAATTGCATTGGCTCGAGCTATGATCAAAGATCCTAAAATCCTTCTTTTAGATGAACCTACCAGTGCTCTTGATGCTGAGTCAGAGTCTGCAGTCCAACAGGCCATTGACAAGATTTCTGTTGGTCGAACAACCATTGTCATTGCTCACAGGATAGCAACAGTTAAGAATGCTGACACCATTGTGGTTCTTGAAAATGGTTCTGTCATTGAGATTGGTGACCATCGCCAGCTTATGGGAAAAGCTGGTGCCTACTATAACCTTGTCAAGCTTGCGACAGAAGCCATTTCTCAACCACTTTCTAAAGAAAATGGCATACAAAAGGCCAAAGATTTTTCCATCTATGAGAATTCAGTTCCTGATGTATCAAGATCAAGATATGCAGTTGATGTCTCAAGGTCTAAGTACTTGAAATCCATGCAAGATGAAAAACAAGCAGAAATGGAAGATCAGCAACAGAAAAAGCCACAAAATTTCCGACTTTCTGAGGTTTGGAAGTTGCAAAAACCGGAGTTTGTGATGTTGTTTTCAGGATTTCTTCTGGGTATGCATGCCGGTGCTTTTCTGTCCCTTTTTCCATTGGTTTTAGGCCTAGCCCTTGGAGTATATTTTGACGAAGACACTTCAAAGATGAAAAGGGATGTTGCACATCTTTGTCTAGCACTTGTTGGGCTTGGATTTGGTTGCATAATTTCTATGACAGGACAACAAGGTCTTTGTGGTTGGGCCGGAACAAGGCTCACAATGAGGGTTAGAGACCTTTTATTTCAATCTATACTAAAACAAGAACCGGCGTGGTTTGATTTTGAAGACAACTCCACCGGAGTGCTAGTGTCAAGGCTATCAGTTGACTGCATTAGTTTTCGTTCAGCACTTGGTGATAGATTCTCAGTCCTTCTAATGGGGGTGAGCTCAGCTGCTGTTGGGCTTGGTGTGTGCTTTTACTTTGAATGGAGATTAACCCTTGTGGCTGCTGCTCTAACTCCTTTAACTCTTGGTGCAAGCTACTTAAGCTTGATCATAAACATTGGGCCACGAGTTGACAACAATTCTTATGCTAGAGCTAGCAATATTGCTTCTGGTGCAGTTTCTAACATAAGAACAGCTACTGCATTTTCTGCCCAAGAACAGATAGTCAAGTCCTTTGATCGAGCCTTATCAGAACCTAGGAGAAAATCATTAAAAAGGTCACAGATTCTAGGTCTAACACTTGGGTTCTTTCAAGGTGCCATGTATGGAGCATATACCTTAATTCTTTGGTTTGGTGCCCGCCTTGTAAAAGAAAACACAACAAAATTTGGGGACGTGTACAAGATTTTTCTCATCCTCGTTTTGAGCTCTTTTTCTGTGGGACAACTAGCTGGTTTAGCCCCAGATACTTCTTTGGCTGCTACAGCAATTCCGGCAGTTCTAGACATCATAAATCGTAGGCCACTGATAGGCAACGATAAAAGGGAAGGTAGGAAACTAGAACGATCAAAGGCATTCAAGTTAGAATTCAACATGGTTACATTTGCATACCCATCTAGGCCTGAGGTGATAGTGTTGAGGAATTTCTGTTTGAAGGTAAAAGGTGGAAGCACGGTTGCCTTAGTGGGGGCAAGTGGGTCAGGAAAATCAACGGTGGTATGGTTGATACAGAGGTTCTATGATCCAAATCAAGGGAAGGTGATGATGGGTGGGTTAGATTTGAAAGTCATTGATGTGAAGTGGTTGAGGAGACAAACAGCTTTGGTGGGTCAAGAACCTGCACTGTTTGCTGGGAGTATAAGGGAGAATATTGCCTTTGGAGACCCAGATGCCTCATGGGCTGAAATTGAAGTTGCAGCAAAGGAAGCTTACATTCACAAATTCATCAGTGGCCTTCCTCAAGGTTATGAAACTCAGGTTGGTGCAAGTGGGGTCCAGCTATCAGGTGGGCAAAAACAGAGGATTGCCATAGCAAGGGCTATATTGAAGAAATCAAGGGTGCTACTACTTGATGAAGCAAGTAGTGCCTTGGACTTGGAATCAGAGAAGCATGTTCAAGATGCGCTTAGGAATGTTTCAAAAGATGCAACAACCATAATAGTAGCCCACCGTCTTTCTACAATAAGAGAGGCTGATAGCATCGCAGCTATGAAAGATGGGGCAGTGGCGGAGTATGGAAGCCATGACACTCTCATGGCTTCCCATCTTAATGGTTTGTATGCTAGCCTAGTTCGTGCTGAGACGGAAGCCAACGCCTTTTCTTGA | 4521 | 0.4397 | MADSSFEFDYYSSSRHHPPTYPTPVSSHNVSRSFTASSSRSNPNSRRGRRSSRFPATPIASDDDRSWQTEVSWRFEATGWREYSRNLGSVLTPWAASPSDRSRVFRQSANDYYLSRTSGFRGFTNSQCEHSGYVPSRRVELQSYVARDNDQSYFDQHSKSNGFSKLDIIKGGFSRKTKNSPLADEDELSIKDYSIADASFISNGRHGHDLELSSTKHGNSDYVRHYLDRGIKSNSQLYGSHGGGYSHHDIDKVSGYEDGEEDMDEDDVEAPRSVGLFSLFRYSTKWDLVLVILGSLGALINGGSLPWYSYLFGTVVNAISDESSNGDKTQMLKDVEKVCIYMTGLAATVMVGAYLEIACWKLVGERSAQRIRTEYLRAVLRQDISFFDTEISTGDIMHGIASDVAQIQEVMGEKMAHFIHHVFTFICGYTVGFLRSWKVSLVVLSVTPVTMFCGIAYKAIYGGLSAKEEASYMKAGSIAEQAISSIRTVFSFVAESQLAAKYSELLEKSVPVGAKIGFAKGAGMGIIYLVTYSTWALAFWYGSILIDRNEIKGGEAIATFFGVMVGGRGLALALSYFAQFAQGTVAASRVFEIIDRIPEIDPYSPEGRKLSSARGRIEFKNVCFAYPSRPDALILDSLKLVIPSSRTSALVGASGGGKSTIFALMERFYDPIEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFATTILENVMMGKDNATRKEAIAACIAADAHRFISSLPLGYDTQVGDKGTRLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQQAIDKISVGRTTIVIAHRIATVKNADTIVVLENGSVIEIGDHRQLMGKAGAYYNLVKLATEAISQPLSKENGIQKAKDFSIYENSVPDVSRSRYAVDVSRSKYLKSMQDEKQAEMEDQQQKKPQNFRLSEVWKLQKPEFVMLFSGFLLGMHAGAFLSLFPLVLGLALGVYFDEDTSKMKRDVAHLCLALVGLGFGCIISMTGQQGLCGWAGTRLTMRVRDLLFQSILKQEPAWFDFEDNSTGVLVSRLSVDCISFRSALGDRFSVLLMGVSSAAVGLGVCFYFEWRLTLVAAALTPLTLGASYLSLIINIGPRVDNNSYARASNIASGAVSNIRTATAFSAQEQIVKSFDRALSEPRRKSLKRSQILGLTLGFFQGAMYGAYTLILWFGARLVKENTTKFGDVYKIFLILVLSSFSVGQLAGLAPDTSLAATAIPAVLDIINRRPLIGNDKREGRKLERSKAFKLEFNMVTFAYPSRPEVIVLRNFCLKVKGGSTVALVGASGSGKSTVVWLIQRFYDPNQGKVMMGGLDLKVIDVKWLRRQTALVGQEPALFAGSIRENIAFGDPDASWAEIEVAAKEAYIHKFISGLPQGYETQVGASGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHVQDALRNVSKDATTIIVAHRLSTIREADSIAAMKDGAVAEYGSHDTLMASHLNGLYASLVRAETEANAFS | 1506 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi07g0573 | 1506 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 609 | 853 | IPR027417 | - | |
| Glsi07g0573 | 1506 | CDD | ABC_MTABC3_MDL1_MDL2 | 617 | 854 | - | - | |
| Glsi07g0573 | 1506 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 617 | 853 | IPR003439 | GO:0005524 | |
| Glsi07g0573 | 1506 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 940 | 1224 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Glsi07g0573 | 1506 | CDD | ABC_MTABC3_MDL1_MDL2 | 1261 | 1498 | - | - | |
| Glsi07g0573 | 1506 | Gene3D | ABC transporter type 1, transmembrane domain | 278 | 864 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi07g0573 | 1506 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 292 | 582 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Glsi07g0573 | 1506 | FunFam | ABC transporter B family member 1 | 1249 | 1500 | - | - | |
| Glsi07g0573 | 1506 | Gene3D | - | 607 | 855 | IPR027417 | - | |
| Glsi07g0573 | 1506 | ProSitePatterns | ABC transporters family signature. | 756 | 770 | IPR017871 | GO:0005524|GO:0016887 | |
| Glsi07g0573 | 1506 | PANTHER | ABC TRANSPORTER B FAMILY | 259 | 853 | IPR039421 | - | |
| Glsi07g0573 | 1506 | MobiDBLite | consensus disorder prediction | 242 | 267 | - | - | |
| Glsi07g0573 | 1506 | SMART | AAA_5 | 644 | 830 | IPR003593 | GO:0016887 | |
| Glsi07g0573 | 1506 | SMART | AAA_5 | 1287 | 1473 | IPR003593 | GO:0016887 | |
| Glsi07g0573 | 1506 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Glsi07g0573 | 1506 | Pfam | ABC transporter | 635 | 784 | IPR003439 | GO:0005524 | |
| Glsi07g0573 | 1506 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1260 | 1496 | IPR003439 | GO:0005524 | |
| Glsi07g0573 | 1506 | SUPERFAMILY | ABC transporter transmembrane region | 926 | 1240 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi07g0573 | 1506 | Gene3D | ABC transporter type 1, transmembrane domain | 1111 | 1256 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi07g0573 | 1506 | Gene3D | ABC transporter type 1, transmembrane domain | 886 | 1104 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi07g0573 | 1506 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 927 | 1242 | - | - | |
| Glsi07g0573 | 1506 | MobiDBLite | consensus disorder prediction | 7 | 51 | - | - | |
| Glsi07g0573 | 1506 | Pfam | ABC transporter | 1278 | 1426 | IPR003439 | GO:0005524 | |
| Glsi07g0573 | 1506 | SUPERFAMILY | ABC transporter transmembrane region | 279 | 602 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi07g0573 | 1506 | Pfam | ABC transporter transmembrane region | 292 | 566 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Glsi07g0573 | 1506 | Pfam | ABC transporter transmembrane region | 939 | 1208 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Glsi07g0573 | 1506 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 292 | 590 | - | - | |
| Glsi07g0573 | 1506 | ProSitePatterns | ABC transporters family signature. | 1399 | 1413 | IPR017871 | GO:0005524|GO:0016887 | |
| Glsi07g0573 | 1506 | FunFam | ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 | 1111 | 1251 | - | - | |
| Glsi07g0573 | 1506 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1257 | 1497 | IPR027417 | - | |
| Glsi07g0573 | 1506 | Gene3D | - | 1258 | 1500 | IPR027417 | - | |
| Glsi07g0573 | 1506 | FunFam | ABC transporter B family member 4 | 607 | 860 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi07g0573 | Glsi-ChrGlsi07 | 5070612 | 5076560 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi07g0573 | 969 | 1503 | Calmodulin-binding Proteins | AT2G36910 | 39.106 | 3.59e-107 | 369 |