Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0568 ATGGCCACCAAAGATTCAATAATGGGGTTGCAGGAAATTTACTGTGAAGCCGATGGATCCAATTCTGGTTCTGATTGGGATGATATGGAAAGAGACCCGGATTTTGACCTACTCGAAGAAACCTATAGCAAGTTCTCAAACCTCTCATTCAAGAAGAAGGCAAAGGCGCGTGTTTTTGATGGTCAGGACCTGCGTACTGAGACAGACCCAGAAGAGCTGGAGATGACTGCACCAGGTCTTGATGAGAAAGATGAGAAAAATTTTGAGCAAGTCCAGAAAATCATCGAAGCCGGCGTACTAGAGAAATTGAAAGTGCACGAATGTAAGTTGTACTTGAGGAAGAATGGTCTGAGATTAACAGGAAATAAGGACACACTCATCCAGCGCATAAGGGAGCATCTAAAGATTATACATGATGGAGGGGAGAAAAAGTACCCGCCTTCTAGCTTTGTATTGAATTGTAAAGGTGATGCATGTACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAGCATAGCATCCAGGAGTGCCAGTGGTCCCCCTTGCGGCCAAAGGATTGTTGCAGGTCGCATAGTTAAAGAAAGCTATGGTGCTGCCAAGCAACAACATACATTTACGATTGAAGTGCTCTGGAGCAAGGGAGAGAAGCCTCTCCCTCCACTTTATCCCCTACTGATTAAGGGTCGAAACCTTTATAGATTGAAGACTTTGAGACAGAGATGGGACGATGAAAGGGAGAGGCAGAAAATTTTGATGGAAAAACACTCAAGGGGGAATGTTGCTAGGGCAGATAGAGAAGCAAGGATACAAGAAAAGGAAAAGAGGAAAGCAAATATGGAAAATAGGCTTTCTAAAAAGGAGTCATTGAGAAATCGATCTGAGTCACATCCCCTCATGACCAAGTCACAATTTCAACCTCAAGAATCGGACATTCTTATTAATTCAGCGAAGCCAGATTTTTCCTTTGATGATGGCATGAAAGTTGCAACTATACCTCATCAGCAAATGATTTACCATCCTCATAATCAGCAAGCTTTGAAGCGCTCAGCTGATTGTAGGATTACTTATGATCATACCAGGAGAGCTGAACTTGGACAAAACTATAATTGGCCTAAAATCCATTCCAGAGAAAAACAAATTACTATTGAGAAATACCCTTACAGTACTGAGACAAACAGGTCTGCAGAGTGGGCTCATCATAGAATACCTTTGACGGGCGTAAATCACTTGCTTCCATTGCCCTCCAGTAGAGAATCCTACAGGCAGAAGCAACTGTGCAGACATTATGCTCAAGGGAGGAGGTGCCATTATGGGGACAACTGCAAATTTTTACATGATTTTAGAGAGCAAGTCAATCTGGACGTTAGCAGAAGAGATATGTCTACTACTGTCCTAGGATACAGAATCTCAGCAACAATTATGATTGCTCCAACTTCTATGCATAAGTTGGCTCATCCAGAAGTCTTTGCTTCATCTCGAGGCCAAATTTTATCACCTCTTCCTTTCCTTTTGGATTATCATTTAATGATTGCACCTCAACTAAAGAACTTTGATGGCCTTTTTTCAACTCAAGTTGAGTCGGATATAGCATGGTTGAATTCTATTACAAACTTGCCAATTCTTATCAAGGGTATACTTACTGGTGTTGATGCAACTAAGGAGGTGGAAGTATGTGTTGCGGGTAAAGTCATCTCAAATCATGGAGCTCGCCGGGTTCATTATTCTCCAGCCACCATTTCTGTCCTAGAAGAGTTGGTACATACTACTGGAGGGAAAGTTCATGTTCTCTTTGATGGTGGAGTGGGTCGAGGAACATATGTATTTAAAGCTTTAGCCCTTGGTGCACAAGTTGTCCTTGTTGGAAGGCCAGTACTCTATGGGCTAGCAAAAGGGGAAGCTGGGGCAAGACAAGTCATTGAAATGCTGAGGAATGAGCTTGAGCTAACTATGGCTCTATCTGGATGCCAAAGTGTGATGGATATTTCTAGTAGCCATAATCAGTTTGTAATTACAGATTCTGGTCTGCGTATCAGTGGTTGCATCTGTAGAGAAACACATGAACTATCGACAAGATGGAAAATGACACCTGAGCCAGTGAATGTTAGGGAGTTCCAGCAATTGGCTAGAGAGATCATTCCAAAAATGTATTATGATTTCTATGCTGGTGGAGCTGAGGACGAGTTCTCTCTAAAGGAAAATGAGGAAGCATTTCGTAGAATTACCTTACGACCTAGAGTTCTAGTGGATGTTAGCAGAATAGATATGTCTACTACTGTCCTAGGATACAGAATCTCCGTGCCAATTATGATTGCTCCAACTGCTATGCATAAGTTGGCTCATCCAGAAGGAGAGGTTGCCACAGCTAAAGCAGCAGCTGCATGCAACACTATAATGGTTCTGTCTTTCATGTCCACCTGCACTGTGGAGGAGGTTGCTTCAAGCTGCAACGCTGTTCGGTTCTTCCAATTATATGTTTACAAGAGGCGAGATGTGACCGCTGTATTAGTGCAAAGAGCTGAAAGAAATGGATATAAAGCCCTTGTTCTAACTGTTGATGTTCCAAGACTTGGTCGAAGAGAGGCAGACATAAGAAACAAAATGGTTTCACCTCAATTAAAGAACTTTGATGGCCTTTTTTCAACCCAAGTTGACTCAGATAATATTGGTTCAAATTTGGAAACTTTTGCAAATCAGACATTTGATGCATCTTTGCGATGGGAGGACATAGCATGGTTGAAATCTATTACAAACTTGCCAATTCTTATCAAGGGTATACTTACTGGTGAAGATGCAATAAAGGCGGTGGAAGTAGGTGTTGCTGGTATAGTCGTCTCAAACCATGGAGCTCGCCAGCTTGATTATTCTCCAGCCACCATTTCTGTCCTAGAAGAGGTGGTACATGCTACTAGAGGGAAAATTCCTGTACTCTTTGATGGCGGAGTGCGTCGAGGAACAGATGTATTTAAAGCTTTAGCCCTTGGTGCACAAGCTGTCCTCGTTGGAAGGCCAGTAATCTATGGGCTAGGTGCAAAAGGGGAAGCTGGGGCAAGACGAGTCATTGAAATGCTGAAGAATGAGCTTGAGCTAACTATGGCTCTATCTGGATGCCAAAGTGTGAAGGATATTACTAGAAGCCATGTGAAGACAGAGAAAGAAAGATTTCACTCCATGCTTTAA 3189 0.424 MATKDSIMGLQEIYCEADGSNSGSDWDDMERDPDFDLLEETYSKFSNLSFKKKAKARVFDGQDLRTETDPEELEMTAPGLDEKDEKNFEQVQKIIEAGVLEKLKVHECKLYLRKNGLRLTGNKDTLIQRIREHLKIIHDGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFSIASRSASGPPCGQRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQRWDDERERQKILMEKHSRGNVARADREARIQEKEKRKANMENRLSKKESLRNRSESHPLMTKSQFQPQESDILINSAKPDFSFDDGMKVATIPHQQMIYHPHNQQALKRSADCRITYDHTRRAELGQNYNWPKIHSREKQITIEKYPYSTETNRSAEWAHHRIPLTGVNHLLPLPSSRESYRQKQLCRHYAQGRRCHYGDNCKFLHDFREQVNLDVSRRDMSTTVLGYRISATIMIAPTSMHKLAHPEVFASSRGQILSPLPFLLDYHLMIAPQLKNFDGLFSTQVESDIAWLNSITNLPILIKGILTGVDATKEVEVCVAGKVISNHGARRVHYSPATISVLEELVHTTGGKVHVLFDGGVGRGTYVFKALALGAQVVLVGRPVLYGLAKGEAGARQVIEMLRNELELTMALSGCQSVMDISSSHNQFVITDSGLRISGCICRETHELSTRWKMTPEPVNVREFQQLAREIIPKMYYDFYAGGAEDEFSLKENEEAFRRITLRPRVLVDVSRIDMSTTVLGYRISVPIMIAPTAMHKLAHPEGEVATAKAAAACNTIMVLSFMSTCTVEEVASSCNAVRFFQLYVYKRRDVTAVLVQRAERNGYKALVLTVDVPRLGRREADIRNKMVSPQLKNFDGLFSTQVDSDNIGSNLETFANQTFDASLRWEDIAWLKSITNLPILIKGILTGEDAIKAVEVGVAGIVVSNHGARQLDYSPATISVLEEVVHATRGKIPVLFDGGVRRGTDVFKALALGAQAVLVGRPVIYGLGAKGEAGARRVIEMLKNELELTMALSGCQSVKDITRSHVKTEKERFHSML 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0568 1062 SUPERFAMILY FMN-linked oxidoreductases 702 1051 - -
Glsi07g0568 1062 Pfam FMN-dependent dehydrogenase 712 1052 IPR000262 GO:0016491
Glsi07g0568 1062 Pfam FMN-dependent dehydrogenase 450 491 IPR000262 GO:0016491
Glsi07g0568 1062 Pfam FMN-dependent dehydrogenase 531 669 IPR000262 GO:0016491
Glsi07g0568 1062 SUPERFAMILY FMN-linked oxidoreductases 451 668 - -
Glsi07g0568 1062 SMART sap_9 100 134 IPR003034 -
Glsi07g0568 1062 ProSiteProfiles SAP motif profile. 100 134 IPR003034 -
Glsi07g0568 1062 FunFam Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 701 1061 - -
Glsi07g0568 1062 ProSiteProfiles Zinc finger C3H1-type profile. 424 452 IPR000571 GO:0046872
Glsi07g0568 1062 Pfam CCCH-type zinc finger 429 450 IPR041367 -
Glsi07g0568 1062 CDD alpha_hydroxyacid_oxid_FMN 707 1048 IPR012133 GO:0010181|GO:0016491
Glsi07g0568 1062 ProSitePatterns FMN-dependent alpha-hydroxy acid dehydrogenases active site. 949 955 IPR008259 GO:0016491
Glsi07g0568 1062 ProSiteProfiles FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. 697 1056 IPR037396 -
Glsi07g0568 1062 Coils Coil 264 293 - -
Glsi07g0568 1062 Pfam SAP domain 100 134 IPR003034 -
Glsi07g0568 1062 Gene3D SAP domain 84 146 IPR036361 -
Glsi07g0568 1062 Gene3D Aldolase class I 517 677 IPR013785 -
Glsi07g0568 1062 Gene3D Aldolase class I 701 1061 IPR013785 -
Glsi07g0568 1062 ProSiteProfiles FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. 415 675 IPR037396 -
Glsi07g0568 1062 PANTHER S -2-HYDROXY-ACID OXIDASE-RELATED 701 1058 - -
Glsi07g0568 1062 SUPERFAMILY CCCH zinc finger 425 453 IPR036855 GO:0046872
Glsi07g0568 1062 MobiDBLite consensus disorder prediction 261 298 - -
Glsi07g0568 1062 Gene3D Aldolase class I 438 495 IPR013785 -
Glsi07g0568 1062 MobiDBLite consensus disorder prediction 261 308 - -
Glsi07g0568 1062 SMART c3hfinal6 425 451 IPR000571 GO:0046872
Glsi07g0568 1062 SUPERFAMILY SAP domain 89 135 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0568 Glsi-ChrGlsi07 5027857 5041542 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi07g0568 FMN_dh 4.9e-136 CL0036