Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0563 ATGCAGAATCCCAGGCTGAAGCAGCAGCAACAGCAAGCTCTGATGCAACAAGCTCTTCTTCAACAACAGTCTCTCTATCACCCTGGCCTCTTAGCTCCTCCTCAGATTCAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAGCCACTTTTGCAAGAAGTTTTTGCAAGTACTGGCCCGGTTGAAGGGTGTAAACTTGTTAGAAAGGAGAAGTCATCCTATGGATTCATTCACTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGACATCTATTTGGGCAGCCAATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTACAACATTTTCGTTGGTGATCTTAGTTCTGAGGTTACTGATGCTACATTATATGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGATGTTCGAGGGGGTTTGGATTTGTTTCATTCCGTAATCAACAGGAAGCTCAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGTAGTAGACAGATACGCTGCAACTGGGCTACAAAAGGTGCTAGTTCTAGTGACGAGAAGCAAAACTCAGACACCAAAAGTGTGGTCGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACAACTAACATTGATGCCCCAGAGAACAATCCTCAATATACTACCGTCTATGTGGGCAATCTTGCTCCAGAGGTAACCCAGCTTGATCTCCACCGCCACTTCCATGCTCTTGGGGCTGGAGTATTAGAGGAGGTCCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCACTGGCTATACAGATAGGGAATGCCCAATCTATTCTCTGCGGCAAACAAATTAAGTGCTCCTGGGGTAGCAAGCCCACTCCGCCTGGAACTGCTTCAAATCCTCTCCCCCCACCTGCTGCTGCACCTCTGCCAGGCCTCTCTGCATCTAATCTTTTGGCCTATGAGCGACAGCTAGCAATGAGCAAAATGGGTGGTGTCCATGCTCTGATGCATCCCCAGGGACAGCTTCCTCTTAAACAGGCTGCAATTGGAGCGAGCCAGGCAATATATGATGGTGGGTTCCAAAATGTTGCTGCTGCACAACAAATGATGTACTACCAGTGA 1257 0.4678 MQNPRLKQQQQQALMQQALLQQQSLYHPGLLAPPQIQPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLVRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSSEVTDATLYACFSVYPSCSDARVMWDQKTGCSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGASSSDEKQNSDTKSVVELTNGSSEDGKETTNIDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVLEEVRVQRDKGFGFVRYSTHAEAALAIQIGNAQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSASNLLAYERQLAMSKMGGVHALMHPQGQLPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0563 418 FunFam Oligouridylate-binding protein 1C 237 339 - -
Glsi07g0563 418 SUPERFAMILY RNA-binding domain, RBD 248 339 IPR035979 GO:0003676
Glsi07g0563 418 CDD RRM1_PUB1 56 126 - -
Glsi07g0563 418 MobiDBLite consensus disorder prediction 216 256 - -
Glsi07g0563 418 CDD RRM2_PUB1 138 217 - -
Glsi07g0563 418 Gene3D - 237 339 IPR012677 -
Glsi07g0563 418 FunFam oligouridylate-binding protein 1-like isoform X2 137 232 - -
Glsi07g0563 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Glsi07g0563 418 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
Glsi07g0563 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 335 IPR000504 GO:0003723
Glsi07g0563 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 338 - -
Glsi07g0563 418 Gene3D - 136 234 IPR012677 -
Glsi07g0563 418 Gene3D - 1 135 IPR012677 -
Glsi07g0563 418 SUPERFAMILY RNA-binding domain, RBD 38 132 IPR035979 GO:0003676
Glsi07g0563 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Glsi07g0563 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 319 IPR000504 GO:0003723
Glsi07g0563 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Glsi07g0563 418 SUPERFAMILY RNA-binding domain, RBD 133 224 IPR035979 GO:0003676
Glsi07g0563 418 SMART rrm1_1 55 124 IPR000504 GO:0003723
Glsi07g0563 418 SMART rrm1_1 261 331 IPR000504 GO:0003723
Glsi07g0563 418 SMART rrm1_1 140 213 IPR000504 GO:0003723
Glsi07g0563 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0563 Glsi-ChrGlsi07 4996278 5003344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0563 49 336 Eukaryotic Initiation Factors Gene Family AT4G34110 29.043 5.38e-24 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0563 07 4996278 5003344 Glsi07g0563 07 4996278 5003344 ECH