LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g0561	ATGGCCGTATTCCTCCGGCCAACTCTCTTATTCTTCTTCTTCTTCATCCTCATCAATTTCCCATTCACATATTCAATGTCAGAAGCTGAAGCTTTGGTCAATTTCAAAAACTCAGTCTCCAATTCCCAAGCTCTGCAAAACTGGGTGGCTAACTCTGTACCTTGCAAGGAAGACGAAGAGTGGGATGGGGTTATCTGCAACAACGGCATTGTCGCTGGACTTCGCCTCGAAGGAATGGGGCTATCGGGGAAGATTGATGTCAATTCATTGCTTGAAATCAAGGGTCTTCGAATTTTCAGCATTGTAAACAATAATTTCTCCGGTTCAATCCCAGATATCAATCGAATAGGTTTCTTGAGAGCCATATATTTGTCAGGAAATCAATTTTCCGGGGAAATTCCCCCGGATTACTTCCAGAAAATGAGGTCTCTGAAGAAATTGTGGCTTGCTGATAACAAATTTACGGGTCAGATTCCATCTCAAATCCCTCAACTTATTGAGTTTCATCTTGAGAACAATCAATTTAGTGGAACTATTCCTGATATAGATAGAGCATCACTGGCACAATTCAATGTGTCCAACAACAAATTGGAAGGTGAAATTCCATCTAGCTTATCGAAATTCGGCGAGAGCTCATTTTCTGGGAATTCTGGGCTCTGCGGCGAGATGTTAGGCAAAACCTGTGAAAAGCCAGCTGAGCCACCAAAACCTTTAGAAACACCACCAAATAATGCAGGCTTGAAGAACAATGACAACAATGGTGATGGGTCTGGTGATTCAAATAGCAGCAAGAGTAGCACAACGAAGATTGTTGTCATAGTAGCATCAATTTTAGTGCTTATCACTCTAGTAATTTTTCTCTTTCTGAGGTCAAGGAGAAAGAAGGATAATTTTATAACGGTTGAAAGAGAAAATAGTAACGAAGAGGCAGCAGTAGAAGTTCAGGTTAGTGCAGCACCAGTGAAAAAAGAAGAGAGTTTAAGCAGAAAAACAAACCATGGTTCCAGCAAAAGGGGATCTGCTAAAGGTGGGGGCGGAGGAGTGGGAGAGCTTGTGATGGTGAATGAAGAGAAAGGTGTTTTTGGGATGACAGATTTGATGAAGGCAGCTGCAGAAGTGCTGGGAAATGGAGGGTTTGGGTCGTCTTACAAAGCTGTGATGGCTAATGGAGTGGCAGTGGTGGTGAAGAGGATGAGAGAGATGAATGTGTTGGGAAGAGATGGGTTTGATGCTGAGATAAGGAAGCTTGGAAATCTGAGACACTGGAATATCTTGACCCCTTTAGCTTATCATTTTAGAAAGGATGAGAAATTGGTGGTCTTTGAGTACGTTCCCAAAGGCAGTCTACTCTATTTGTTGCATGGTGATCGTGGACCATCGCACACTAAGCTGGATTGGCCTGCACGTTTAAAGATTGTACGAGGAATTGCTGAAGGGATGCGTTATCTTCACACAGAGCTTGCTTCCTCTGATTTACCTCATGGCAATCTCAAGTCCAGTAATATTCTTCTTGGTCCTGATTATGAGCCTATGCTTGTTGATTATGGATTTAGCTCCATGATTAACACTACCAATATAGCACAAGCTTTATTTGCCTATAAGGCTCCTGAAGCAATACAAAATGGCCAAGTTTCTCCTAAATCTGATGTTTATTGTCTTGGAGTCGTCATCCTTGAGATCCTCTCTGGGAAATTCCCTTCTCAGTATCTTAACAATGGCAAGGGTGGAATTGATATAGTGCAATGGGTTGCATCAGCAATTTCAGAAGGAAGGGAATCAGAGCTGTTAGACCCTGAACTTGCTAACTCTAGAAATTCACTTGGTGAAATGGAGAAACTCATCCATATTGGTGTTGCTTGCACTGTAAGCAACCCTGAGCAGCGATTAGACATGGCAGAAGCATTTAGAAGGATGGAGGAGGTAAAAACAGGTGGGGGCCAAGAGACAAGAACAATGGAGATCTTACCATCGCTCAAATATGGATATGCAGATTCTACTCACGTATTAACCACACTAGACAATGATGAGCAATCTCAAAGGAGCCTTGAATCGAGCAACTTCGGAAGCCGGTCAGGGCGCCGAAATGCTGATAATTCTGACTTCGCTATTTCATAA	2115	0.426	MAVFLRPTLLFFFFFILINFPFTYSMSEAEALVNFKNSVSNSQALQNWVANSVPCKEDEEWDGVICNNGIVAGLRLEGMGLSGKIDVNSLLEIKGLRIFSIVNNNFSGSIPDINRIGFLRAIYLSGNQFSGEIPPDYFQKMRSLKKLWLADNKFTGQIPSQIPQLIEFHLENNQFSGTIPDIDRASLAQFNVSNNKLEGEIPSSLSKFGESSFSGNSGLCGEMLGKTCEKPAEPPKPLETPPNNAGLKNNDNNGDGSGDSNSSKSSTTKIVVIVASILVLITLVIFLFLRSRRKKDNFITVERENSNEEAAVEVQVSAAPVKKEESLSRKTNHGSSKRGSAKGGGGGVGELVMVNEEKGVFGMTDLMKAAAEVLGNGGFGSSYKAVMANGVAVVVKRMREMNVLGRDGFDAEIRKLGNLRHWNILTPLAYHFRKDEKLVVFEYVPKGSLLYLLHGDRGPSHTKLDWPARLKIVRGIAEGMRYLHTELASSDLPHGNLKSSNILLGPDYEPMLVDYGFSSMINTTNIAQALFAYKAPEAIQNGQVSPKSDVYCLGVVILEILSGKFPSQYLNNGKGGIDIVQWVASAISEGRESELLDPELANSRNSLGEMEKLIHIGVACTVSNPEQRLDMAEAFRRMEEVKTGGGQETRTMEILPSLKYGYADSTHVLTTLDNDEQSQRSLESSNFGSRSGRRNADNSDFAIS	704

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g0561	704	Pfam	Leucine rich repeat N-terminal domain	27	67	IPR013210	-
	Glsi07g0561	704	Gene3D	Transferase(Phosphotransferase) domain 1	444	651	-	-
	Glsi07g0561	704	Gene3D	Ribonuclease Inhibitor	184	231	IPR032675	-
	Glsi07g0561	704	ProSiteProfiles	Protein kinase domain profile.	368	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g0561	704	SUPERFAMILY	L domain-like	25	208	-	-
	Glsi07g0561	704	MobiDBLite	consensus disorder prediction	672	704	-	-
	Glsi07g0561	704	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	10	642	IPR046959	-
	Glsi07g0561	704	CDD	STKc_IRAK	374	640	-	-
	Glsi07g0561	704	Gene3D	Phosphorylase Kinase; domain 1	350	443	-	-
	Glsi07g0561	704	Pfam	Protein kinase domain	372	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g0561	704	MobiDBLite	consensus disorder prediction	243	265	-	-
	Glsi07g0561	704	MobiDBLite	consensus disorder prediction	312	345	-	-
	Glsi07g0561	704	Gene3D	Ribonuclease Inhibitor	25	183	IPR032675	-
	Glsi07g0561	704	MobiDBLite	consensus disorder prediction	224	265	-	-
	Glsi07g0561	704	SUPERFAMILY	Protein kinase-like (PK-like)	372	638	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g0561	Glsi-ChrGlsi07	4973409	4976089	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g0561	8	641	Receptor kinase-like Gene Family	AT3G42880	45.954	0.0	566

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Glsi07g0561		Pkinase	6.3e-31	CL0016