Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0544 ATGCCTTCCACAAGGCCTCTATGGAAAACCTTTCTACTTGGCTGCTTCAAGGCGAGGCACCCATCCTTGGACTCAACTGTAGTTTCCAAAAAGGCACCTTCAAGGAGACTATCCCTCTCTGATTGGAGCAATGCTTCATCTCTGGACTTCATGAGCGATTTATCCAACTCTCCTTTTGTATCAAATCTTCATATCTTCACTTACAAGGAGCTCAAAGAGATCACATGCAACTTCAACAAAACCAGCGTTCTTGGGGAAGGTGGGTTTGGAAAGGTTTACAAAGGATTTATTGATGACGAGCTTAGGCCTGGATTGAAAGCTCAGGTTGTAGCAGTTAAGGTGTTAGATTTGGATGGAAAACAAGGCCATAGAGAGTGGTTGGCTGAAGTATTCTTTCTGGGGCAGTTGAAGCATCCCCATCTGGTGAACCTAATTGGGTATTGCTGTGAAGAAGAGCACAGGCTTCTTGTCTACCAATACATGGAGAGAGGAAATCTAGAGGACAAGCTTTTCAAAGGCTATTTAGCAACCTTGCCATGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAGGGTCTTGCTTTTCTACATGAAGAAGAGAAACCAGTCATATATAGAGATGTTAAAGCCTCAAACATACTGTTGGATGCAGATTACAATGCCAAGCTCTCTGATTTTGGGCTAGCAATAGATGGTCCAGAAGAACATCAATCACATATCACAACTAATGTGATGGGTACCCATGGCTATGCTGCTCCTGAGTACATCATGACAGGCCATTTGACAAGCATGAGCGATGTATATAGCTTTGGGGTAGTTCTTCTAGAGCTACTTACAGGAAGAAGATCCGTGGACAGCAATCGACCCACCAGGGAGAGGGATTTGGTAGAGTGGGCAAGACCTCTTCTGAAAGATTCCCATAAACTTGAAATCGTAATAGATCCAAGACTCGAGGGTCAGTACTCCATTGAAGGGGCTAGAAAGGTGGCTGCTTTGGTTTATCAATGTCTTAGCCGTCAGGCAAAGACTAGACCCTCAATGCGCACAGTGGTCAAGTCCTTAGAGCCTGTCATGAACTCGATCGATTTCCCAGTTGGCCATTTCGTTTATGTAGCTCCCTGCGAGGGAGACAATGAAACTTCAGTCCAGAGTAATGGAAAGGAAGGAGGAGAAAATGACAACGATGGGGTTTGTAGAAATAGGAATAAAAATGAAGAAGAAAAGGTGGAGAAGAAGAAGGAGAAGGGTCGTCACAAGCATCGAAAAAAGCGTAGGCATAGGCATCAGATTAAACCCCTGAGGTCTCCTATTGTTTACTCTGATACTGCTCTGTATAAAACTCTTGGTACCAACTTGTACACTTTCAAGCAAACACCAAAAGCAGATGAAGATAATCATATTCTAGTGTAA 1413 0.436 MPSTRPLWKTFLLGCFKARHPSLDSTVVSKKAPSRRLSLSDWSNASSLDFMSDLSNSPFVSNLHIFTYKELKEITCNFNKTSVLGEGGFGKVYKGFIDDELRPGLKAQVVAVKVLDLDGKQGHREWLAEVFFLGQLKHPHLVNLIGYCCEEEHRLLVYQYMERGNLEDKLFKGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPEEHQSHITTNVMGTHGYAAPEYIMTGHLTSMSDVYSFGVVLLELLTGRRSVDSNRPTRERDLVEWARPLLKDSHKLEIVIDPRLEGQYSIEGARKVAALVYQCLSRQAKTRPSMRTVVKSLEPVMNSIDFPVGHFVYVAPCEGDNETSVQSNGKEGGENDNDGVCRNRNKNEEEKVEKKKEKGRHKHRKKRRHRHQIKPLRSPIVYSDTALYKTLGTNLYTFKQTPKADEDNHILV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0544 470 Gene3D Transferase(Phosphotransferase) domain 1 161 364 - -
Glsi07g0544 470 SUPERFAMILY Protein kinase-like (PK-like) 52 356 IPR011009 -
Glsi07g0544 470 PANTHER OS01G0588500 PROTEIN-RELATED 57 358 - -
Glsi07g0544 470 SMART serkin_6 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0544 470 Pfam Protein tyrosine and serine/threonine kinase 81 355 IPR001245 GO:0004672|GO:0006468
Glsi07g0544 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Glsi07g0544 470 MobiDBLite consensus disorder prediction 393 414 - -
Glsi07g0544 470 FunFam Serine/threonine-protein kinase BIK1 45 160 - -
Glsi07g0544 470 ProSiteProfiles Protein kinase domain profile. 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0544 470 CDD STKc_IRAK 84 357 - -
Glsi07g0544 470 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 364 - -
Glsi07g0544 470 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Glsi07g0544 470 MobiDBLite consensus disorder prediction 415 433 - -
Glsi07g0544 470 MobiDBLite consensus disorder prediction 380 435 - -
Glsi07g0544 470 ProSitePatterns Protein kinases ATP-binding region signature. 84 113 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0544 Glsi-ChrGlsi07 4838243 4840080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0544 64 386 Glycoside Hydrolase AT3G07070 48.160 2.70e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi07g0544 PK_Tyr_Ser-Thr 1.3e-46 CL0016