Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0531 ATGAGCAATTGGATGGGGTTCTCTCTGACTCCACACTTGAGGATTGAAGAAGTATATGGGAGAGAAAACCAAGACCACCGTGGAGGCATTCCTCCTCCTCCTCCTCGCTTGTCTGTTATGCCCTTGCATTCAGATGGCTCTCTCTGTGTTGTTGACCCTTTTAGACACTCTGGTGCACCAGAAGAATGGAGGTATGATGATGGGGTAGCTGGAGGAAACTCTAATGAAGAAGGTCCAAAGTTAGAAGATTTCTTGGGTGGTTACTCAAACTCGCCTATTTCTGAAACAAAAGTCTATTGCCAAGGCACTCAACATCAAGACCAAAACCAGAACCAGAATAGCATTTCCAAAATCAATGTTAATGTAGCCCCAAGCTTCAACACCAACACTGAGATAGAAACAGGGGAAAATATCACAAACCCATCTTCCGTAATCCAATCTTTTCATGCATACAATGATAACCCCCGAGCCCTAATTCCCAGCAATGGCATGTACAAGTCCTGGTTGGCTCAAACCCAGTTTTCTGATGGAAAACCTTCTACTGAAGCTAATGGGTTTAATTACCAATCTCTGTCCCTGACTATGAGCCCCAGTGTACAAAACGGGGTTGGTGCAATTTCCCCTATTCAACTGGATGATGATTCTCGTAAACGCTCGGTGACAAAATCTCTTGCTAGAGAACCTGTGCCTCGGAAATCCATAGATACTTTTGGACAAAGAACATCTCAGTACCGGGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGACAAGGTGGTTATGACAAGGAAGAAAAAGCAGCCAGGGCTTATGACTTAGCCGCACTCAAGTATTGGGGTCCAACTACTCACATAAATTTCCCTTTAAGCACTTACGAGAAGGAACTTGAAGAGATGAAGCACATGACTAGGCAAGAATTTGTGGCCAATTTGAGGAGGAAGAGCAGCGGATTTTCAAGGGGCGCTTCCGTGTATAGGGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGTATTGGAAGAGTTGCAGGAAACAAGGACTTGTATCTCGGTACATTTAGCACACAAGAGGAAGCTGCAGAAGCATATGATATAGCAGCAATAAAGTTCAGAGGGACAAGTGCTGTGACCAACTTTGATATAAGCAGGTACGACGTGAAGAGAATATGCTCAAGCTCCACCCTCATTGCAGGAGATCTTGCAAAACGGTCACCTAAAGACTCGGCTCCTGCACCCGCCACCCCCACCCCCACTGAGGACTTCAATTGTTGTGCTGCTTCAACATCGACACCACCTTCTCATCCTCATCAACAACAACAACAACACTCTTCTGATGAGCTAGCCAACATAGTGTGGATCAATCCTGAACAACATGAGAATGAAAACACCAACAAGAATAAGAACGCGTCGAGTATTCCAGAAAGCCCTAAGGGTTCTGAGGGAATGCCTAGTGAGTTTATTGGGGCGAGCGGTGGAACAGAATTTGGAAATGGGTATTTCTCACTGCAGGGACCAAAATATGATGATGGGAACGACGAGAATGATAATTTGACTTCCAATCGGCTTGGGAATTTGGGTTTGGTTCATCAAGTTCCTATGTTTGCTTTGTGGAACGAATGA 1680 0.4524 MSNWMGFSLTPHLRIEEVYGRENQDHRGGIPPPPPRLSVMPLHSDGSLCVVDPFRHSGAPEEWRYDDGVAGGNSNEEGPKLEDFLGGYSNSPISETKVYCQGTQHQDQNQNQNSISKINVNVAPSFNTNTEIETGENITNPSSVIQSFHAYNDNPRALIPSNGMYKSWLAQTQFSDGKPSTEANGFNYQSLSLTMSPSVQNGVGAISPIQLDDDSRKRSVTKSLAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSAPAPATPTPTEDFNCCAASTSTPPSHPHQQQQQHSSDELANIVWINPEQHENENTNKNKNASSIPESPKGSEGMPSEFIGASGGTEFGNGYFSLQGPKYDDGNDENDNLTSNRLGNLGLVHQVPMFALWNE 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0531 559 SUPERFAMILY DNA-binding domain 341 402 IPR016177 GO:0003677
Glsi07g0531 559 CDD AP2 341 402 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 MobiDBLite consensus disorder prediction 478 538 - -
Glsi07g0531 559 ProSiteProfiles AP2/ERF domain profile. 243 306 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 FunFam AP2-like ethylene-responsive transcription factor ANT 242 308 - -
Glsi07g0531 559 ProSiteProfiles AP2/ERF domain profile. 342 400 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 Gene3D AP2/ERF domain 242 308 IPR036955 GO:0003700|GO:0006355
Glsi07g0531 559 Gene3D AP2/ERF domain 342 402 IPR036955 GO:0003700|GO:0006355
Glsi07g0531 559 SMART rav1_2 243 312 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 SMART rav1_2 342 406 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 MobiDBLite consensus disorder prediction 421 465 - -
Glsi07g0531 559 CDD AP2 242 308 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 Pfam AP2 domain 243 298 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 Pfam AP2 domain 341 392 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 PRINTS Ethylene responsive element binding protein signature 382 402 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 PRINTS Ethylene responsive element binding protein signature 244 255 IPR001471 GO:0003700|GO:0006355
Glsi07g0531 559 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 478 - -
Glsi07g0531 559 MobiDBLite consensus disorder prediction 440 465 - -
Glsi07g0531 559 FunFam AP2-like ethylene-responsive transcription factor 341 402 - -
Glsi07g0531 559 SUPERFAMILY DNA-binding domain 242 308 IPR016177 GO:0003677
Glsi07g0531 559 MobiDBLite consensus disorder prediction 478 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0531 Glsi-ChrGlsi07 4723634 4726978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0531 1 428 AP2-EREBP Transcription Factor Family AT1G72570 51.549 2.64e-135 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi07g0531 AP2 1.1e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0531 07 4723634 4726978 Glsi07g0531 07 4723634 4726978 ECH