Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0520 ATGCGATTATTATTTATGGTGCCATTTAGAACAGTAGAAAATAATCCAAAAAAAAAAGGTTTCCCAGACCAAATCTCAGGGAGGAGGCTCAGTTTTCTTCAGAGTTCACAGAAACTCACCGGCATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTAGCAGATGGAGTTTTCTTCGCGGAGTTGAATGAAGTTTTGACCAGGGAGCTTGCAGAGGATGGGTATTCTGGGGTCGAAGTTAGGGTTACGCCCATGCGGACGGAGATCATCATAAGGGCGACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGAAGAATAAGGGAATTGACTTCTATTGTTCAGAAGCGTTTTAAGTTCCCTGAGAACAGTGTTGAGCTTTATGCTGAGAAAGTCAACAACAGAGGGCTATGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGGCTTGCTGTCCGAAGGGCCTGCTATGGTGTCCTAAGATTTGTTATGGAAAGTGGAGCGAAAGGTTGTGAGGTTATTGTTAGTGGTAAGCTCCGGGCTCAGCGTGCCAAATCAATGAAATTCAAGGATGGGTACATGATATCATCTGGTCAGCCTGTCAAGGAATATATTGACTCTGCTGTGAGGCATGTGCTTCTGAGACAGGGTGTTCTTGGGATCAAGGTGAAAATTATGCTTGATTGGGATCCTAAGGGTAAGCAAGGCCCAATGAAACCCCTGCCTGATATCGTCACCATCCATCCGCCAAAGGAGGAAGAAGATTACACTGCCAGACCCTTGCAACAGCCCCCCACCACCAACATAGAGATTGCAGCAGTTTAG 837 0.4659 MRLLFMVPFRTVENNPKKKGFPDQISGRRLSFLQSSQKLTGMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMKPLPDIVTIHPPKEEEDYTARPLQQPPTTNIEIAAV 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0520 278 FunFam 40S ribosomal protein S3 134 269 - -
Glsi07g0520 278 Pfam KH domain 61 134 IPR004044 GO:0003723
Glsi07g0520 278 SUPERFAMILY Ribosomal protein S3 C-terminal domain 134 232 IPR036419 -
Glsi07g0520 278 ProSitePatterns Ribosomal protein S3 signature. 188 224 IPR018280 -
Glsi07g0520 278 NCBIfam 30S ribosomal protein S3 49 251 IPR005703 GO:0003735|GO:0006412|GO:0015935
Glsi07g0520 278 ProSiteProfiles Type-2 KH domain profile. 62 133 IPR004044 GO:0003723
Glsi07g0520 278 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 47 239 - -
Glsi07g0520 278 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 51 140 IPR009019 GO:0003723
Glsi07g0520 278 FunFam 40S ribosomal protein S3 42 133 - -
Glsi07g0520 278 Gene3D - 39 132 IPR015946 -
Glsi07g0520 278 Pfam Ribosomal protein S3, C-terminal domain 147 229 IPR001351 GO:0003735|GO:0006412
Glsi07g0520 278 Gene3D - 134 260 IPR036419 -
Glsi07g0520 278 CDD KH-II_40S_S3 46 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0520 Glsi-ChrGlsi07 4608962 4611078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0520 42 262 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 91.403 1.70e-151 421