LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g0520	ATGCGATTATTATTTATGGTGCCATTTAGAACAGTAGAAAATAATCCAAAAAAAAAAGGTTTCCCAGACCAAATCTCAGGGAGGAGGCTCAGTTTTCTTCAGAGTTCACAGAAACTCACCGGCATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTAGCAGATGGAGTTTTCTTCGCGGAGTTGAATGAAGTTTTGACCAGGGAGCTTGCAGAGGATGGGTATTCTGGGGTCGAAGTTAGGGTTACGCCCATGCGGACGGAGATCATCATAAGGGCGACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGAAGAATAAGGGAATTGACTTCTATTGTTCAGAAGCGTTTTAAGTTCCCTGAGAACAGTGTTGAGCTTTATGCTGAGAAAGTCAACAACAGAGGGCTATGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGGCTTGCTGTCCGAAGGGCCTGCTATGGTGTCCTAAGATTTGTTATGGAAAGTGGAGCGAAAGGTTGTGAGGTTATTGTTAGTGGTAAGCTCCGGGCTCAGCGTGCCAAATCAATGAAATTCAAGGATGGGTACATGATATCATCTGGTCAGCCTGTCAAGGAATATATTGACTCTGCTGTGAGGCATGTGCTTCTGAGACAGGGTGTTCTTGGGATCAAGGTGAAAATTATGCTTGATTGGGATCCTAAGGGTAAGCAAGGCCCAATGAAACCCCTGCCTGATATCGTCACCATCCATCCGCCAAAGGAGGAAGAAGATTACACTGCCAGACCCTTGCAACAGCCCCCCACCACCAACATAGAGATTGCAGCAGTTTAG	837	0.4659	MRLLFMVPFRTVENNPKKKGFPDQISGRRLSFLQSSQKLTGMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMKPLPDIVTIHPPKEEEDYTARPLQQPPTTNIEIAAV	278

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g0520	278	FunFam	40S ribosomal protein S3	134	269	-	-
	Glsi07g0520	278	Pfam	KH domain	61	134	IPR004044	GO:0003723
	Glsi07g0520	278	SUPERFAMILY	Ribosomal protein S3 C-terminal domain	134	232	IPR036419	-
	Glsi07g0520	278	ProSitePatterns	Ribosomal protein S3 signature.	188	224	IPR018280	-
	Glsi07g0520	278	NCBIfam	30S ribosomal protein S3	49	251	IPR005703	GO:0003735\|GO:0006412\|GO:0015935
	Glsi07g0520	278	ProSiteProfiles	Type-2 KH domain profile.	62	133	IPR004044	GO:0003723
	Glsi07g0520	278	PANTHER	30S/40S RIBOSOMAL PROTEIN S3	47	239	-	-
	Glsi07g0520	278	SUPERFAMILY	Prokaryotic type KH domain (KH-domain type II)	51	140	IPR009019	GO:0003723
	Glsi07g0520	278	FunFam	40S ribosomal protein S3	42	133	-	-
	Glsi07g0520	278	Gene3D	-	39	132	IPR015946	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g0520	Glsi-ChrGlsi07	4608962	4611078	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g0520	42	262	Cytoplasmic Ribosomal Protein Gene Family	AT5G35530	91.403	1.70e-151	421

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