LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g0504	ATGAAGTGCTTATGCAAGAAAGACTCTGGTCTATGTTCTGCTCATTCAACATCCCCCTATTTTCTAGGATGCTCCCCATGGGGAACTTTTTCTGAACTTGGTGTCCAACAATCACCAGTGTCTGAAAATTTGAGCTTGAAAATGGGAGTTCTGCCACTACAATGTAATACTAAGCCATTAAATTTTCAATTTCAAGACCAGAATTCATCTTCAACCCAATCTACTGATCAATCTTATCCTGAAGTAGGTTCAGCAAAATCAGGTCAATTTTCTATCCAGTATATCAATTCTTCTGCCCATTCAACATGTAGCAGAACTGGTGAAAAGCCTGTGGGAGGTCTCATCAGGTCATCTGTGGGGAGACAAAATTTTGCCTTCCCTTCTCCGCAACTGGATCATAGCCAATCAATAATTTATCATGCTCAACTAATGGGAATGGCTCCTGTTCGAATTCCACTGCCACTTGATCTTACAGAAGAACCCATATTTGTGAATGCAAAGCAGTATCATGCCATTCTGAGGCGTAGACAGTATCGTGCAAAACTTGAAGTGCAGAGCAAACTCCTCAAACCTCGGAAACCATATCTTCATGAATCCCGGCATCTACATGCATTAAAGAGGGCCAGAGGTTCTGGTGGACGCTTTCTCAACACCAAAAAGCTTCAAGAACTGAGGCTCACTTCAGCAAGCCAATGCCAAGATGTTTCTGGCTGCTCCCGATTGAACCGGAGTGTTAATATGCCAGAATCTAAAGTGCATCAGCTGGAAAACTGCAAAGATGGTGCTTCCACCACCTGTTCTGAAGTCACAAGTGCATTTAATAGTGATGCCATCTTCCAGCAGCAGCAGGTGTCAGACTTCAGGTTCTGTGGATATCCTTCTCACATTGGAAGCAATATGCAAGGTTACTCAGCTGATATGGGTGGTGATGAGAATCAACACCGTCTATCTGTCTTCATGTGA	963	0.432	MKCLCKKDSGLCSAHSTSPYFLGCSPWGTFSELGVQQSPVSENLSLKMGVLPLQCNTKPLNFQFQDQNSSSTQSTDQSYPEVGSAKSGQFSIQYINSSAHSTCSRTGEKPVGGLIRSSVGRQNFAFPSPQLDHSQSIIYHAQLMGMAPVRIPLPLDLTEEPIFVNAKQYHAILRRRQYRAKLEVQSKLLKPRKPYLHESRHLHALKRARGSGGRFLNTKKLQELRLTSASQCQDVSGCSRLNRSVNMPESKVHQLENCKDGASTTCSEVTSAFNSDAIFQQQQVSDFRFCGYPSHIGSNMQGYSADMGGDENQHRLSVFM	320

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g0504	320	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	56	283	IPR001289	GO:0003700\|GO:0006355
	Glsi07g0504	320	ProSiteProfiles	NF-YA/HAP2 family profile.	158	218	IPR001289	GO:0003700\|GO:0006355
	Glsi07g0504	320	Gene3D	-	158	220	-	-
	Glsi07g0504	320	SMART	cbf3	157	218	IPR001289	GO:0003700\|GO:0006355
	Glsi07g0504	320	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	160	215	IPR001289	GO:0003700\|GO:0006355
	Glsi07g0504	320	PRINTS	CCAAT-binding transcription factor subunit B signature	192	215	IPR001289	GO:0003700\|GO:0006355
	Glsi07g0504	320	PRINTS	CCAAT-binding transcription factor subunit B signature	161	183	IPR001289	GO:0003700\|GO:0006355
	Glsi07g0504	320	ProSitePatterns	NF-YA/HAP2 subunit signature.	163	183	IPR018362	GO:0003677\|GO:0016602

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g0504	Glsi-ChrGlsi07	4429298	4431902	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g0504	14	320	CCAAT-HAP2 Transcription Factor Family	AT1G17590	42.183	2.78e-52	173

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Glsi07g0504		CBFB_NFYA	2.2e-25	No_clan

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