Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0504 ATGAAGTGCTTATGCAAGAAAGACTCTGGTCTATGTTCTGCTCATTCAACATCCCCCTATTTTCTAGGATGCTCCCCATGGGGAACTTTTTCTGAACTTGGTGTCCAACAATCACCAGTGTCTGAAAATTTGAGCTTGAAAATGGGAGTTCTGCCACTACAATGTAATACTAAGCCATTAAATTTTCAATTTCAAGACCAGAATTCATCTTCAACCCAATCTACTGATCAATCTTATCCTGAAGTAGGTTCAGCAAAATCAGGTCAATTTTCTATCCAGTATATCAATTCTTCTGCCCATTCAACATGTAGCAGAACTGGTGAAAAGCCTGTGGGAGGTCTCATCAGGTCATCTGTGGGGAGACAAAATTTTGCCTTCCCTTCTCCGCAACTGGATCATAGCCAATCAATAATTTATCATGCTCAACTAATGGGAATGGCTCCTGTTCGAATTCCACTGCCACTTGATCTTACAGAAGAACCCATATTTGTGAATGCAAAGCAGTATCATGCCATTCTGAGGCGTAGACAGTATCGTGCAAAACTTGAAGTGCAGAGCAAACTCCTCAAACCTCGGAAACCATATCTTCATGAATCCCGGCATCTACATGCATTAAAGAGGGCCAGAGGTTCTGGTGGACGCTTTCTCAACACCAAAAAGCTTCAAGAACTGAGGCTCACTTCAGCAAGCCAATGCCAAGATGTTTCTGGCTGCTCCCGATTGAACCGGAGTGTTAATATGCCAGAATCTAAAGTGCATCAGCTGGAAAACTGCAAAGATGGTGCTTCCACCACCTGTTCTGAAGTCACAAGTGCATTTAATAGTGATGCCATCTTCCAGCAGCAGCAGGTGTCAGACTTCAGGTTCTGTGGATATCCTTCTCACATTGGAAGCAATATGCAAGGTTACTCAGCTGATATGGGTGGTGATGAGAATCAACACCGTCTATCTGTCTTCATGTGA 963 0.432 MKCLCKKDSGLCSAHSTSPYFLGCSPWGTFSELGVQQSPVSENLSLKMGVLPLQCNTKPLNFQFQDQNSSSTQSTDQSYPEVGSAKSGQFSIQYINSSAHSTCSRTGEKPVGGLIRSSVGRQNFAFPSPQLDHSQSIIYHAQLMGMAPVRIPLPLDLTEEPIFVNAKQYHAILRRRQYRAKLEVQSKLLKPRKPYLHESRHLHALKRARGSGGRFLNTKKLQELRLTSASQCQDVSGCSRLNRSVNMPESKVHQLENCKDGASTTCSEVTSAFNSDAIFQQQQVSDFRFCGYPSHIGSNMQGYSADMGGDENQHRLSVFM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0504 320 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 56 283 IPR001289 GO:0003700|GO:0006355
Glsi07g0504 320 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Glsi07g0504 320 Gene3D - 158 220 - -
Glsi07g0504 320 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Glsi07g0504 320 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 160 215 IPR001289 GO:0003700|GO:0006355
Glsi07g0504 320 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Glsi07g0504 320 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Glsi07g0504 320 ProSitePatterns NF-YA/HAP2 subunit signature. 163 183 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0504 Glsi-ChrGlsi07 4429298 4431902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0504 14 320 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.183 2.78e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi07g0504 CBFB_NFYA 2.2e-25 No_clan