Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0503 ATGGACGCGCGAGCACAGTATAATCCTCGCACTGTTGAAGAGGTTTTTAGGGATTTTAAGGGCCGAAGAGCTGGGTTGATTAAAGCCCTTACAACGGATGTTGAAGAATTCTACAACCAGTGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGGTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTTCTGGGCATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTGTCTCTAGTTGCTGTCCATAGTGATTCATGGTTACTTGCCATTGCCTTATATTTTGGAGCGAGATTTGGGTTTGATAAAGCTGACAGAAAACGACTTTTCAATATGATCAATGAATTGCCAACAATTTTTGAAGTCGTTACTGGTGTAGCAAAGAAAGAAGTTAAGGAGAAGTCTTCAGTTCCAAATCACAGTGGCAGCAAATCCAAGTCCAGCACTAAAGTGAGAGGTTCAGAAAGCCAGGGTAGAGAGTCAAAGGCATTGCTATTAAAAGATGAGGACGAAATAGAGGATGAGCAAGATGAGGATGAACATGGGGAGACCTTGTGTGGGGCATGCGGCGAGAATTATGGTAATGATGAATTCTGGATTTGCTGTGACAGCTGCGAGAAGTGGTTCCATGGCAAATGTGTGAAGATTACCCCTGCTAGGGCAGAGCATATCAAACAATATAAGTGTCCATCATGCAATAACAAGCGAGCTCGATCCTGA 762 0.437 MDARAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLAIALYFGARFGFDKADRKRLFNMINELPTIFEVVTGVAKKEVKEKSSVPNHSGSKSKSSTKVRGSESQGRESKALLLKDEDEIEDEQDEDEHGETLCGACGENYGNDEFWICCDSCEKWFHGKCVKITPARAEHIKQYKCPSCNNKRARS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0503 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Glsi07g0503 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Glsi07g0503 253 CDD PHD_AL_plant 199 249 IPR044104 -
Glsi07g0503 253 FunFam PHD finger alfin-like protein 192 248 - -
Glsi07g0503 253 Pfam PHD-finger 200 248 IPR019787 -
Glsi07g0503 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Glsi07g0503 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Glsi07g0503 253 SMART PHD_3 199 247 IPR001965 -
Glsi07g0503 253 MobiDBLite consensus disorder prediction 167 183 - -
Glsi07g0503 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Glsi07g0503 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Glsi07g0503 253 MobiDBLite consensus disorder prediction 145 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0503 Glsi-ChrGlsi07 4422597 4427262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0503 5 253 Alfin-like Transcription Factor Family AT3G42790 75.502 1.27e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Glsi07g0503 Alfin 1.1e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0434 06 3725661 3731225 Glsi07g0503 07 4422597 4427262 CCT
Glsi07g0503 07 4422597 4427262 Glsi06g0434 06 3725661 3731225 ECH
Glsi07g0503 07 4422597 4427262 Glsi07g0503 07 4422597 4427262 ECH