Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0466 ATGTCGATATTGCCGAGCATCAGAGGGACTTTGGTCTACCTCAAAGACCTTCCCCGGCTAACTATTGAATTCATCAGTGTTACCAAGCCTGACCGAGTTGCATTTCAGATATGGAATCATGATGTGGAAAAAAATTTCTTCCTTGTGACTTTGAAGCTTGACCAGATTCCGAATCATGAGGATATACATTTTGATTGCAACTCATGGGTGTACCCAGAAAATACGTATAAATTTCCTCGCGTTTTCTTCGCCAACAAGCCGTACCTCCCAAGTCAAACACCAGAGGCATTGCTCAAATACAGAGAACAAGAGCTGATAGCTTTAAGAGGAGATGGAACTGGACAACGTTTGGATGGGGAAAGAATCTATGATTATGCTACCTACAATGATTTGGGCAATCCTGATCTAGATGATAGCCTAGCTCGTCCAGTTCTTGGAGGGTCTAACCAATATCCCTACCCTCGTAGGGGAAGAACTGGCAGGCCACCCACAAAAAAAGTGCCTCCTCAAGTGAATCCTGATGGCAAACTGGTATTAAAGTTTCCAATCCCAGCGGTCATTCAAGATAATTTGGATGGATGGATAACGGATGAAGAATTTGCACGAGAGATGCTTGCGGGTGTAAATCCTAATTTAATCCGCCTTCTCAAAGAGTTTCCCCTACAAGGCAGTAAGATAACTGAAGAACACTTGGAGAAAAACCTTGATGGACTCACTGAAGATGAGGCACTTAAGAGCCAGAAATTGTTCATATTGGATCACCATGACTCACTTATGCCATATTTGAGGCGGATTAACAATGAATCTTCCAGAAAGTCTTATGCAACTAGGACAATCCTTTTCTTGAAAGACGATGAGACTTTGAAGCCATTGGCCATTGAATTAAGTTTACCCCATCCCGACGGCGATCAATTTGGTGTTGTTAGTGAAGTGTACACTCCCGAAGATGGTCCCCTTTGGTTATTAGCTAAAGGTTATGTAGTCGTAAATGACGCGAGCTACCATCAGCTTGTCAGCCATTGGTTAAATACTCATGCAGTCGTTGAGCCATTCGTTATATCAGCAAATAGGCAACTCAGTGTGCTTCATCCTATTTATAAACTTCTGCATCCTCATTTTAAGGATAACATGTTTATAAATGCACTTGCTCGACAAACCTTAATTAATGCTGACGGTACTATAGAGGCTTCCTTCTTGCCTGGAAAGTATTCTATAGAGTTTACTTCTATGCATTATAAAAATTGGGTTTTCCCTGAGCAAACACTGCCAGCTGATCTTATCAAAAGAGGAATGGCAATTGAGGATCCAACTAAGCCTCATGGGCTTCGCCTTCTGATAGGGGACTACCCATATGCTGATGATGGACTAGAGATATGGGCTGCTATTGAGAAATGGGTTCAAGACTATGTCAACTACTACTATGGGTCAGATGACACTATTAAAAATGACCCTGAACTACAAGCTTGGTGGAAAGAACTTGTAGAAGTTGGTCATGCCGACTTAAAAGATAAGCCTTGGTGGCCTACGATGCAAACTCGTAAAGATCTTATTGACTCTTGCACTATTATCATCTGGCTTGCTTCAGCCTTTCATGCAGCTATCAATTTTGGCCAGTTTCCTTATGGAGGTTATATTGTTAACCGTCCAACTCTCAGCAGAAGGCTTATACCCCAAAAAGGAACTCCAGAATATGATGAGCTTGTGAAGAACCCAGAGGTAGGTTTCTTGAAAACAATTACACCGAAGTTGGAGACCCTTCTTGACCTTTCAACTATAGAAATATTGTCAGGCCATACTTCAGATGAAGTCTACCTTGGGGCAAGAAACAGTCTTTACTGGACTTATGATGAAAAGCCGTTGGTGGCTTTAGAGGAATTCAATAAGACATTGGCAAAAATTGAAGACGATATCATACGCAAGAACAATGATCCGAGTTTGAAAAACAGGAGAGGGCCGGTGAATCTGCCCTACACTCTGCTTTATCGTAGCAGTGAACAAGGAATGACATTCAAAGGAATTCCAAACAGTATTTCTATATAA 2040 0.4167 MSILPSIRGTLVYLKDLPRLTIEFISVTKPDRVAFQIWNHDVEKNFFLVTLKLDQIPNHEDIHFDCNSWVYPENTYKFPRVFFANKPYLPSQTPEALLKYREQELIALRGDGTGQRLDGERIYDYATYNDLGNPDLDDSLARPVLGGSNQYPYPRRGRTGRPPTKKVPPQVNPDGKLVLKFPIPAVIQDNLDGWITDEEFAREMLAGVNPNLIRLLKEFPLQGSKITEEHLEKNLDGLTEDEALKSQKLFILDHHDSLMPYLRRINNESSRKSYATRTILFLKDDETLKPLAIELSLPHPDGDQFGVVSEVYTPEDGPLWLLAKGYVVVNDASYHQLVSHWLNTHAVVEPFVISANRQLSVLHPIYKLLHPHFKDNMFINALARQTLINADGTIEASFLPGKYSIEFTSMHYKNWVFPEQTLPADLIKRGMAIEDPTKPHGLRLLIGDYPYADDGLEIWAAIEKWVQDYVNYYYGSDDTIKNDPELQAWWKELVEVGHADLKDKPWWPTMQTRKDLIDSCTIIIWLASAFHAAINFGQFPYGGYIVNRPTLSRRLIPQKGTPEYDELVKNPEVGFLKTITPKLETLLDLSTIEILSGHTSDEVYLGARNSLYWTYDEKPLVALEEFNKTLAKIEDDIIRKNNDPSLKNRRGPVNLPYTLLYRSSEQGMTFKGIPNSISI 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0466 679 SUPERFAMILY Lipoxigenase 89 679 IPR036226 -
Glsi07g0466 679 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 34 88 IPR036392 GO:0005515
Glsi07g0466 679 Gene3D - 316 678 - -
Glsi07g0466 679 PRINTS Plant lipoxygenase signature 54 72 IPR001246 GO:0016491
Glsi07g0466 679 PRINTS Plant lipoxygenase signature 80 101 IPR001246 GO:0016491
Glsi07g0466 679 PRINTS Plant lipoxygenase signature 119 135 IPR001246 GO:0016491
Glsi07g0466 679 PRINTS Plant lipoxygenase signature 152 171 IPR001246 GO:0016491
Glsi07g0466 679 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 87 679 IPR013819 GO:0016702|GO:0046872
Glsi07g0466 679 SMART LH2_4 5 85 IPR001024 GO:0005515
Glsi07g0466 679 Gene3D - 197 315 - -
Glsi07g0466 679 PRINTS Lipoxygenase signature 317 334 IPR013819 GO:0016702|GO:0046872
Glsi07g0466 679 PRINTS Lipoxygenase signature 335 352 IPR013819 GO:0016702|GO:0046872
Glsi07g0466 679 PRINTS Lipoxygenase signature 355 375 IPR013819 GO:0016702|GO:0046872
Glsi07g0466 679 Gene3D PLAT/LH2 domain 31 88 - -
Glsi07g0466 679 ProSiteProfiles PLAT domain profile. 1 84 IPR001024 GO:0005515
Glsi07g0466 679 Pfam Lipoxygenase 97 168 IPR013819 GO:0016702|GO:0046872
Glsi07g0466 679 Pfam Lipoxygenase 176 661 IPR013819 GO:0016702|GO:0046872
Glsi07g0466 679 ProSitePatterns Lipoxygenases iron-binding region signature 2. 362 372 IPR020834 GO:0016702|GO:0046872
Glsi07g0466 679 Coils Coil 623 643 - -
Glsi07g0466 679 Gene3D - 89 196 - -
Glsi07g0466 679 FunFam Lipoxygenase 315 678 - -
Glsi07g0466 679 PANTHER LIPOXYGENASE 174 679 IPR000907 GO:0016702|GO:0034440|GO:0046872
Glsi07g0466 679 ProSitePatterns Lipoxygenases iron-binding region signature 1. 335 349 IPR020833 GO:0016702|GO:0046872
Glsi07g0466 679 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0466 Glsi-ChrGlsi07 3648192 3652481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0466 174 679 Acyl Lipid Metabolism Gene Families AT1G55020 60.653 0.0 658