Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0458 ATGGGAAATCAGAAGCAGAAGTGGACGGCAGAGGAAGAAGAAGCCTTACTCGCCGGAATTGCGAAGCATGGTCCCGGCAAGTGGAAGAACATTCTCAAAGATCCCGAATTCGCCCCTTTTCTCACTCACCGTTCCAACATTGACCTTAAGGATAAATGGCGAAATTTAAGTGTTAGTACTTCTCAAGTTACTAAAGAAAAAGTGAGGAATCCCAAGCTTAAAGCTCTAGCACCTACTTCCGTTGCTGGTGTACAAAATACTTCTGCTCCTCCAGTTCGGCAAAGTGCAGCTTCAGATGCTGTCATTGATGATCCTTCTCAAAATGCACAGGATGTCAAACATGCTCCACGGTATAATGCAATGGTTTTTGAAGCTCTATCAACATTAAAAGATTCCAATGGATCTGACATAAATGCCATTGTTAGTTTCATTGAGCAAAAGCATGAGGTTCCCCAAAATTTTAGACGGGCCTTAAGTACAAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAAAAGGTACTAAATTGTTACAAGATAAAAAAAGAAACCCCTTTGGGGACTAAAACACCTGCACCAAAACAAAAGGATGTCTGGCCACGTCAATCACCCGTCTCTGGTTTTATAGCATCTAATGAGACAGTAATGGATGCTGCTGAGACTGCTGCATACAGAGTTGCGGAAGCAGAGAACAAATCATTTTTGGCAGCTGAGGCAGTCAAGGAGGCGGAAAGAATCTCAAAGTTGGCCGAAGATACTGATTCAATGTTACAACTAGTGAAAGAAATTTATAAACAATGTTCACGGGGTGAAATTATCCTCTTGGCTTAA 831 0.4224 MGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTSQVTKEKVRNPKLKALAPTSVAGVQNTSAPPVRQSAASDAVIDDPSQNAQDVKHAPRYNAMVFEALSTLKDSNGSDINAIVSFIEQKHEVPQNFRRALSTRLRRLVAQGKLEKVLNCYKIKKETPLGTKTPAPKQKDVWPRQSPVSGFIASNETVMDAAETAAYRVAEAENKSFLAAEAVKEAERISKLAEDTDSMLQLVKEIYKQCSRGEIILLA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0458 276 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Glsi07g0458 276 CDD H15 116 194 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi07g0458 276 PANTHER SINGLE MYB HISTONE 4 1 275 IPR044597 GO:0003691
Glsi07g0458 276 Gene3D - 110 198 IPR036388 -
Glsi07g0458 276 SMART sant 4 59 IPR001005 -
Glsi07g0458 276 Gene3D - 2 58 - -
Glsi07g0458 276 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi07g0458 276 FunFam Telomere repeat-binding factor 1 2 58 - -
Glsi07g0458 276 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Glsi07g0458 276 FunFam Telomere repeat-binding factor 1 8 85 - -
Glsi07g0458 276 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi07g0458 276 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Glsi07g0458 276 SUPERFAMILY "Winged helix" DNA-binding domain 114 194 IPR036390 -
Glsi07g0458 276 Pfam linker histone H1 and H5 family 116 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi07g0458 276 CDD SANT_TRF 6 56 - -
Glsi07g0458 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0458 Glsi-ChrGlsi07 3540969 3544940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0458 1 276 Single Myb Histone (SMH) Gene Family AT1G72740 51.590 4.21e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi07g0458 Linker_histone 1.5e-11 CL0123