Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0456 ATGTTGAATAAGTGGGGCTTCATTGATGTGAAGACTGAGGAAACTCATATTTGGTTCTACACAATGCATAGATGCCCATGCAATGTTAGAGCAAATTTGGAGGTGAGACAGAGAAAGCTTTGGAGGAATCGGAAAAGAGGACCTGAGAGAAGGGACAGCTTGCGGCCAGCGACTGCGAGTCTGTTTGATGCTTTAGATTACACCACGTATTTGTTTGGAAATATAGTGGCTTTCAGTTTGGAATATGGGGTTGATCCAATTGTTTCTTTTGAAAATTACGATTGTGTGGGCTTGCTTATAAAATACTTATTTAATTTTACTGAATTTTTTCTTTTTGCAGTGATGGCAGGTTTGGCTCCAGAAGGAACACAATTCGATGCTCGTCAATATGATGCTAAGATGAATGAATTGCTTTCCACTGATGGACAGGAATTCTTCACCTCATATGACGAAGTCTATGATACTTTCGATGCAATGGGGTTACAAGAAAATCTTTTGAGAGGCATTTATGCTTATGGTTTTGAGAGGCCTTCTGCGATCCAACAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAACAGGCTCAGTCAGGAACTGGGAAAACAGCAACATTTTGTTCTGGAATTTTGCAGCAACTTGATTTTGGATTGCTTCAATGCCAGGCTTTGGTTTTGGCGCCAACAAGGGAGCTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGTGATTACCTTGGGGTTAAGGTTCATGCTTGCGTAGGTGGGACAAGTGTTCGTGAGGATCAACGCATTCTTCAAGCTGGTGTCCATGTTGTTGTTGGCACTCCTGGGCGTGTGTTTGACATGCTACGAAGGCAGTCTCTTCGCCCAGACCACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATCTTCCAGCTACTGCCAGGGAAAATTCAGGTTGGGGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATCACAAGGAAGTTTATGAATAAGCCAGTGAGAATCTTGGTAAAGCGTGATGAACTGACCCTTGAGGGTATCAAGCAGTTTTATGTAAATGTTGATAAAGAAGAATGGAAGCTGGAGACATTATGTGATCTTTATGAGACACTGGCTATCACCCAAAGTGTCATTTTTGTGAATACTAGGCGCAAGGTTGATTGGCTCACTGACAAGATGCGAAGCAATGATCATACAGTCTCAGCTACCCATGGTGACATGGACCAAAACACTCGGGATATTATCATGCGCGAATTCCGGTCTGGCTCTTCTCGTGTTCTAATAACCACCGACCTCTTGGCTCGTGGTATAGATGTGCAACAAGTCTCTTTGGTTATTAACTATGATCTTCCAACCCAACCTGAAAATTATCTTCATCGTATTGGGAGAAGTGGACGATTTGGAAGGAAAGGTGTTGCCATAAACTTTGTGACTGGAGATGATTCAAGAATGCTGTCTGATATTCAGAAGTTCTATAATGTGAGCGTAGAGGAGCTGCCATCAAATGTTGCTGATCTGCTCTGA 1584 0.428 MLNKWGFIDVKTEETHIWFYTMHRCPCNVRANLEVRQRKLWRNRKRGPERRDSLRPATASLFDALDYTTYLFGNIVAFSLEYGVDPIVSFENYDCVGLLIKYLFNFTEFFLFAVMAGLAPEGTQFDARQYDAKMNELLSTDGQEFFTSYDEVYDTFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDFGLLQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTGDDSRMLSDIQKFYNVSVEELPSNVADLL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0456 527 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Glsi07g0456 527 Pfam Helicase conserved C-terminal domain 380 488 IPR001650 -
Glsi07g0456 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 355 IPR014001 -
Glsi07g0456 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 527 IPR001650 -
Glsi07g0456 527 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 301 309 IPR000629 -
Glsi07g0456 527 FunFam Eukaryotic initiation factor 4A-II 142 361 - -
Glsi07g0456 527 CDD DEADc_EIF4A 158 356 - -
Glsi07g0456 527 Pfam DEAD/DEAH box helicase 179 340 IPR011545 GO:0003676|GO:0005524
Glsi07g0456 527 FunFam Eukaryotic initiation factor 4A-III 362 527 - -
Glsi07g0456 527 Gene3D - 144 362 IPR027417 -
Glsi07g0456 527 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 151 511 - -
Glsi07g0456 527 Gene3D - 363 527 IPR027417 -
Glsi07g0456 527 CDD SF2_C_DEAD 367 497 - -
Glsi07g0456 527 SMART helicmild6 407 488 IPR001650 -
Glsi07g0456 527 SMART ultradead3 173 370 IPR014001 -
Glsi07g0456 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 508 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0456 Glsi-ChrGlsi07 3532507 3537223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0456 115 527 Eukaryotic Initiation Factors Gene Family AT1G72730 88.889 0.0 767
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0420 06 3598927 3603735 Glsi07g0456 07 3532507 3537223 CCT
Glsi07g0456 07 3532507 3537223 Glsi07g0456 07 3532507 3537223 ECH