LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g0454	ATGGAACCTCGAGTTGGGAACAAGTTCCGTCTTGGCCGAAAGATTGGCAGCGGATCGTTTGGGGAGATCTACCTCGGCATTAATATTCAGACAAACGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACCAAGCACCCCCAATTGTTGTATGAATCGAAGTTGTATAAAATACTACAAGGAGGAACTGGAATCCCAAACCTAAAATGGTTTGGTGTTGAGGGAGACTACAATGTGCTTGTAATGGATTTGTTGGGCCCTAGTCTTGAGGATTTATTCAATTTTTGTAGTCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCGAAATCGTTTTTACATCGCGACATCAAGCCAGACAACTTCCTCATGGGGTTAGGGAGACGTGCAAATCAAGTGTACGTCATTGACTTTGGTCTTGCGAAGAAGTATAGAGACACCTCTACTCATCAGCATATTCCTTACAGAGAAAATAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGAGATGACTTAGAGTCACTTGGATATGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCTGGTACTAAGAAGCAAAAGTATGAGAAGATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCATCTTACTTCCATTACTGTCGGTCACTGCGGTTTGATGATAAACCGGATTATGCTTATCTGAAGAGACTTTTCCGTGACCTTTTTATTCGAGAAGGATTTCAGTTTGATTATGTCTTTGACTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACTCCTCCTATCCGTGCTGTTGGTCCTGGTGTTGGACCTAGTTCTGGCATGCCACCAGCTGTTGCAAATGCTGATAATAGACATTTAGGTGGGGAAGATGGTAGACATACTGGTTGGTCTTTGTCAGATCCTACTCGGAGGAGAAATTCTGGACCAATTGTAAATGATGGCATCTTACCGAGACAAAAAGCCCCAGTTGCAAATGACTCAACTGGATCTAAAGATGTTACGTTGTCAAGTTCCAATTTCTTCCGGTCAAGTGGATCTCAAAGGCGAGGTGCTGTATCCAGCAGTCGTGATGCAGTTGTTGTTAGCAGTGAGACTGAACCTTCTCGCCCTCTCCCTGTGGATGCAAGTCCAGGAGCACTTCGTAAAATCTCTGGTGCTCAAAGAAGTTCACCTGTTATATCATCAGAGCACAACCGAACTTCATCTGGCAGGAACACGGCAAACATAAAGAATTTTGACTCAACTCTCAGAGGTATTGAGAGCCTGCATTTCAATGATGAGAGGCTGCAGTATTAG	1428	0.4244	MEPRVGNKFRLGRKIGSGSFGEIYLGINIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNLKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPIRAVGPGVGPSSGMPPAVANADNRHLGGEDGRHTGWSLSDPTRRRNSGPIVNDGILPRQKAPVANDSTGSKDVTLSSSNFFRSSGSQRRGAVSSSRDAVVVSSETEPSRPLPVDASPGALRKISGAQRSSPVISSEHNRTSSGRNTANIKNFDSTLRGIESLHFNDERLQY	475

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Glsi07g0454	475	MobiDBLite	consensus disorder prediction	307	453	-	-
Glsi07g0454	475	CDD	STKc_CK1_delta_epsilon	8	282	-	-
Glsi07g0454	475	ProSiteProfiles	Protein kinase domain profile.	9	278	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Glsi07g0454	475	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
Glsi07g0454	475	FunFam	Putative Casein kinase I	1	85	-	-
Glsi07g0454	475	SMART	serkin_6	9	287	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Glsi07g0454	475	MobiDBLite	consensus disorder prediction	367	406	-	-
Glsi07g0454	475	Gene3D	Transferase(Phosphotransferase) domain 1	1	306	-	-
Glsi07g0454	475	SUPERFAMILY	Protein kinase-like (PK-like)	5	290	IPR011009	-
Glsi07g0454	475	MobiDBLite	consensus disorder prediction	329	343	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g0454	Glsi-ChrGlsi07	3518892	3524021	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g0454	8	213	MAP Kinase Kinase Kinase	AT3G06030	27.149	2.65e-12	67.0

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1	Glsi07g0454		Pkinase	1.7e-27	CL0016

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi06g0417	06	3585106	3589714	Glsi07g0454	07	3518892	3524021	CCT

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