Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0446 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGTTATGGTCACCCGAAGAAGACGAGAAACTCATCAACTACATCACAACTTATGGCCATGGATGCTGGAGCTCTGTCCCAAAACTCGCAGGCCTACAGAGATGCGGAAAGAGTTGCAGATTGAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAACTTCTCTCCTCAAGAAGCAGCGCTCATTATTGAACTCCATAGCATTCTAGGCAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTCAAAAACTTTTGGAACTCAAGTGTAAAGAAGAAGCTCCTTTCTCATGATGTTCTTGTTCCTTCTTTAGCCACAATTTCTGATCATATTCACAGTACTGTAATTAATGGTTCTGTGGAAAGTTTCTTCCCTCTAACTGCAAACCCTAATAATATGATCGTCAACTCTCATCATCACCACCACCCAGACCAGCTGTACCTTCCAACCCCATCGTCAGTCCTACAAGGTTTTGAATTTGGCCATGAAGATCTTAAGATTGGCATTCACAGTAATTATAATGCCAATTTCCTTCATATTCAAAATCCTATGCCAGAAACAGCACCATCCAATCCATATTCTTATGAAGATACTTGTTCGTTGGGCTGTCCAGTGCCTCTTCATCTTAGTCCAAATCAAGAAAATGATCAAATTACCAAACATGATACCACCCCAAATTACATTGTTAATCACAAATTCATCAACCCAAGTTCATTGCAGCATTATGACAGTCAATTGGTGGATCCCATTGAACCAAAAATCTTCGAGAGCATTGAGGATTATGTTTTTTGTAGCATCCCATGTTCTTCATCTTCTTCACAAGAACATGATCCTCTTCAGAGTTATCCATCTGGGATTTATCCACAAGATCAAACTGTGCAGGCAGCAGCCAATTATCACATGGATTTCATAGATTCCATCATTTCATACTTGCCACCATCAACAACATCTTCATCATCAGTATCAAACTCCCAAGTTGTCGCTAACCCCCCTTATCTTCCTTCAAGCTGGGAGCCTTGA 1086 0.4125 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGNFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSVKKKLLSHDVLVPSLATISDHIHSTVINGSVESFFPLTANPNNMIVNSHHHHHPDQLYLPTPSSVLQGFEFGHEDLKIGIHSNYNANFLHIQNPMPETAPSNPYSYEDTCSLGCPVPLHLSPNQENDQITKHDTTPNYIVNHKFINPSSLQHYDSQLVDPIEPKIFESIEDYVFCSIPCSSSSSQEHDPLQSYPSGIYPQDQTVQAAANYHMDFIDSIISYLPPSTTSSSSVSNSQVVANPPYLPSSWEP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0446 361 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Glsi07g0446 361 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi07g0446 361 FunFam MYB transcription factor 6 66 - -
Glsi07g0446 361 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi07g0446 361 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi07g0446 361 CDD SANT 17 61 IPR001005 -
Glsi07g0446 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi07g0446 361 Gene3D - 11 67 - -
Glsi07g0446 361 Gene3D - 69 116 - -
Glsi07g0446 361 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi07g0446 361 PANTHER MYB DOMAIN PROTEIN 55 1 253 - -
Glsi07g0446 361 FunFam Myb transcription factor 69 116 - -
Glsi07g0446 361 CDD SANT 69 109 IPR001005 -
Glsi07g0446 361 SMART sant 66 114 IPR001005 -
Glsi07g0446 361 SMART sant 13 63 IPR001005 -
Glsi07g0446 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0446 Glsi-ChrGlsi07 3357306 3358668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0446 1 118 MYB Transcription Factor Family AT3G13890 94.915 1.78e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi07g0446 Myb_DNA-binding 1.3e-14 CL0123