Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0426 ATGATATCGGGTTTGATGATATTCCACCACCAACAGCAGCAGCAGAATCAACCAGTAGTGGAGGAGAACATGTCCAATTTGACTTCTCCATCTGGCGAGGCCAGTGTTTCCTCAGGCAACAGAACCGAAGTTGGTACCAATTATCCTCCTCAACAGTACTTCGCCCCACCATCAACTCAACCTCAGCCGATGAAGAAGAAGAGAAACCTTCCAGGCAACCCAGACCCAGATGCTGAAGTTATCGCCTTGTCCCCCAAAACTCTTATGGCAACGAATAGGTTCATTTGTGAGATCTGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAGCTTCACAGAAGAGGGCATAATTTGCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAAGTCTATGTGTGCCCAGAACCCGCCTGTGTGCACCATGACCCATCAAGGGCACTTGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAGTGCTCAAAGAGGTACGCAGTTCAATCAGATTGGAAAGCTCACTCTAAAACCTGTGGCACTAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTTTGTGATGCATTGGCAGAGGAGAGTGCAAGAGCAGGAAACCCACTTCTTCCCTCTCATCAACCAGCAGGCTCTTCATCAACATCTCAAATAAATCTCCAAACCCAGTTCAATTCCCAAGATCACCTTCTTGCTTTTCCATTGAAAAAGGAGCAGCAAAGTTTCAGTCTTAGGCCAGAAATACCTCCCTGGCTTGGCCCACCCACTATAGATCTCTCCTCCACATCATCATCCATGCTCTTCTCCACAAGACTAGATCAAGATCTAACCCTCCTCCATGAAAATCCTAACCCTAGCCTTGGCCCCACCCTTCCTTCTGCCTTCCAAGCAGCGCCTTCCCCGCACATGTCAGCTACAGCGTTGCTGCAGAAAGCAGCCCAGATGGGTGCAACCATGACCAAAACCGGCTCCCCACCAGCTGCCATGATCAGGACCCACCAGCAGGCTCACGTGTTTGCTCATTCTGGCAACAACAATCCAACAAGTGGTAATTTCGGTTTGAATTTGTCCTCACGTGAAGATCACATGACCATGACCACCAGTGGTGCTGGTGGGTTTTCTTCTGCTGGTGCTCCTTCAGGTGTACCTCCATCCCTTCTTCATGATGTTATGATCAGCTCTTTCTCTTCTGCTCCTCATGAGTTTGAAGGAACTTCTTTTGAAGATGCCTTTGGTGGGATTTTGAATTCAAAGACTAAAGAAGGGAACTTGCACTTGCATCATGACACCCTTTTAAAAACAACCACCTCCGGCCATCGTAGTAGAGGCTCCGCAGAGGACGGTGGCGGTGGCTGTGGCGGTGGAGGAAATGATGGTTTGACAAGGGATTTCTTAGGTCTTAAACCTCTTTCCCATAGTGATATTCTCAGCATTGCTGGTATTGGACACTGCATGAGCTCCTCCCATGATCAACAAAATCAATCCCATAAACCATGGCAAGGTTAA 1593 0.4815 MISGLMIFHHQQQQQNQPVVEENMSNLTSPSGEASVSSGNRTEVGTNYPPQQYFAPPSTQPQPMKKKRNLPGNPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPACVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAGNPLLPSHQPAGSSSTSQINLQTQFNSQDHLLAFPLKKEQQSFSLRPEIPPWLGPPTIDLSSTSSSMLFSTRLDQDLTLLHENPNPSLGPTLPSAFQAAPSPHMSATALLQKAAQMGATMTKTGSPPAAMIRTHQQAHVFAHSGNNNPTSGNFGLNLSSREDHMTMTTSGAGGFSSAGAPSGVPPSLLHDVMISSFSSAPHEFEGTSFEDAFGGILNSKTKEGNLHLHHDTLLKTTTSGHRSRGSAEDGGGGCGGGGNDGLTRDFLGLKPLSHSDILSIAGIGHCMSSSHDQQNQSHKPWQG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0426 530 FunFam protein indeterminate-domain 12-like 73 141 - -
Glsi07g0426 530 MobiDBLite consensus disorder prediction 1 66 - -
Glsi07g0426 530 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Glsi07g0426 530 MobiDBLite consensus disorder prediction 1 78 - -
Glsi07g0426 530 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
Glsi07g0426 530 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 515 IPR031140 -
Glsi07g0426 530 Gene3D Classic Zinc Finger 148 227 - -
Glsi07g0426 530 MobiDBLite consensus disorder prediction 463 483 - -
Glsi07g0426 530 Gene3D Classic Zinc Finger 73 141 - -
Glsi07g0426 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Glsi07g0426 530 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
Glsi07g0426 530 SMART c2h2final6 170 190 IPR013087 -
Glsi07g0426 530 SMART c2h2final6 135 165 IPR013087 -
Glsi07g0426 530 SMART c2h2final6 94 116 IPR013087 -
Glsi07g0426 530 Pfam Zinc-finger double-stranded RNA-binding 94 116 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0426 Glsi-ChrGlsi07 3044285 3046534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0426 24 530 IDZ Gene Family AT3G13810 49.293 9.84e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi07g0426 zf-C2H2_jaz 7.8e-05 CL0361