Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0411 ATGAGCCGCTACGACAGCCGCTCCGGTGATCCCATTTCCTACCGTGACCGGAGGAGATTTGGTGAGCTAATCTTATGTATGAAGTATGAACCAATAGTTAATGCTCAAGTGCTTTATTGTTTTGTCAGTGATTGGGGGCTAGGTGCACCTACAGGGTATGGTGGCTCGGTCCACTCTTCATCAGGCAGGAGAGATAACGATGATGGTGGGTCGCCGCGGAAATTAAATATGGACAGGTTGCCTCATTTTGAGAAAAACTTCTATAATGAATCACCAGCAGTGAGGGCACTGGCGGAGGAGGAGAGCTTTCACGATGTTGGTTTTCCAGAATATGTGATGCAAGAAATTTCAAAAGCTGGTTTTGTTGAACCTACACCTATTCAATCTCAAGGTTGGCCAATGACTTTGAAGGGGGGTGATCTGATAGGCATTGCAGAAACAGGATCAGGGAAGACACTAGCTTACTTGTTGCCTGCAATAGTGCATGTCAATGCCCAGCCAATTCTAGATCCTGGAGATGGACCAATTGTCTTAGTTTTGGGCCTTTTGGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAGGCTACTAAGTTTGGGGCGTCATCGAGGATTAAGAGTACATGCATATACGGTGGTGTTCCAAAGGGACCTCAAGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCTACGCCGGGAAGGTTGATTGATATGCTTGAGTCAAATTATACGAACTTGCGAAGGGTGACATACCTTGTATTGGATGAGGCTGATAGGATGTTGGACAGGGATTTGATCCTCAGATACGGAAGATTGTCTCTCAGATTTGTCCAGATCATCAAACTTTGTACTGGAGTGCCACCTGGCCAAAGGAGGTTGAACAGTTGGCAAGGCAGTTCCTTTATAACCCCTACAAAATTGGTGGGGTTGCTGGAGGATATAATGGACGGCAGCCGAATACTGATATTCGTGGATACCAAGAAAGGATGTGATCAGATAACTAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGGGATTGGGTGCTCTCAGAGTTTAGATCTGGAAAGAGTCCTATAATGACTGCAACAGATGTTGCTGCTCGTGGTTTAGATGTGAAGGAAGTGAAGTATGTAATAAACTATGATTTCCTGGGATCTCTTGAGGACTGTGTTCATGGCATTGGTCGGACTGGGAGAGCTGGTGCGAAAGGTACTGCCTACACATTCTTCACAGGTGCTAATGCCAGATTTGCAAAGGAATTTGTAACCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCAATGGGACGTGGCGAAACTCCTCCTCCTTCAGGTTATGGGGGTTTCCGAGACCGTGGGAGGGGTTGTGGCAGTGGTCGCTCATGGAGCTGA 1446 0.4654 MSRYDSRSGDPISYRDRRRFGELILCMKYEPIVNAQVLYCFVSDWGLGAPTGYGGSVHSSSGRRDNDDGGSPRKLNMDRLPHFEKNFYNESPAVRALAEEESFHDVGFPEYVMQEISKAGFVEPTPIQSQGWPMTLKGGDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLGLLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNYTNLRRVTYLVLDEADRMLDRDLILRYGRLSLRFVQIIKLCTGVPPGQRRLNSWQGSSFITPTKLVGLLEDIMDGSRILIFVDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKEVKYVINYDFLGSLEDCVHGIGRTGRAGAKGTAYTFFTGANARFAKEFVTILEEAGQKVSPELAAMGRGETPPPSGYGGFRDRGRGCGSGRSWS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0411 481 MobiDBLite consensus disorder prediction 54 76 - -
Glsi07g0411 481 FunFam ATP-dependent RNA helicase RhlB 302 458 - -
Glsi07g0411 481 SMART helicmild6 334 415 IPR001650 -
Glsi07g0411 481 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 256 264 IPR000629 -
Glsi07g0411 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 430 IPR027417 -
Glsi07g0411 481 Gene3D - 305 456 IPR027417 -
Glsi07g0411 481 MobiDBLite consensus disorder prediction 61 76 - -
Glsi07g0411 481 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 101 129 IPR014014 GO:0003724
Glsi07g0411 481 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 98 453 - -
Glsi07g0411 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 450 IPR027417 -
Glsi07g0411 481 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 309 454 IPR001650 -
Glsi07g0411 481 CDD SF2_C_DEAD 309 424 - -
Glsi07g0411 481 MobiDBLite consensus disorder prediction 451 481 - -
Glsi07g0411 481 SMART ultradead3 120 320 IPR014001 -
Glsi07g0411 481 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 308 IPR014001 -
Glsi07g0411 481 Pfam Helicase conserved C-terminal domain 309 415 IPR001650 -
Glsi07g0411 481 Pfam DEAD/DEAH box helicase 125 267 IPR011545 GO:0003676|GO:0005524
Glsi07g0411 481 Gene3D - 73 276 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0411 Glsi-ChrGlsi07 2911864 2922284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0411 102 435 Eukaryotic Initiation Factors Gene Family AT3G19760 30.874 5.37e-50 174