Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0405 ATGACAATGGAGGGAAAGCCTGAGCTCCTCCATGGAACAATAGAAGTCACCATCTTCAATGCCACACCATATGCTTCTTCATTTCCCTTCAATTGTATATGTGCAAATGGGAAGCCTGCATATGTGACGATTAATATAGACAACCAAAAGGTAGCGAAGACAAGTCAAGAACGTGACCGTGTCTGGAACCAAACTTTTCAGATCCAATGTGCTCACCCAACTGATTCAACTATCACCCTTACATTAAAAACATCATGCTCCATAATGGGGAGATTCCATATTCAGGCTCAGCAGTTATTGAAGGAAGAAAGTTTGATCAATGGGTTCTTCCCTCTCCTCATGGAGAATGGAAAACCAAACCCTCAACTCAAGTTAAGGTTTATATTGTGGTTCAAACCTGCAGAACTGGAACCAAGCTGGGCAAAGGTACTCAGCATTGGGGAATTTCAAGGGCTGAGGGACGCTACATTTCCACAAAGGTCCAATTGTCAGGTCAAGCTTTATCATGATGCTCACCATTCTTCTACTTTCCAACCTCCTTTTGATCTATGTGGAGCTCCAAGAAGGCTATGGGAGGATGTTTATAAAGCCATTGAGGATGCAAAGTACTTAATTTATATTGTAGCTTGGTCCTTCAATCCCAGAATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCTCATGCAAGAGGTGTAATGCTGGGTGAGTTATTAAGGAATAAGGCAGACGAAGGAGTGGCTGTGAGGGTAATGCTTTGGGATGATGAAACATCTTTGCCAATTATCAAGAACAAGGGGGTGATGAAAACCCATGATGAGGATGCTTTTGCTTACTTTAAATACACAAAAGTTATATGCAGAAAGTGCCCCAGATCACACCATAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACTATAACTGTTGATACCAGATCACCCAACCCTGCAAATGACAGAGCAATCATGAGCTTTGTTGGTGGGTTAGATTTCTGTGATGGCAGGTATGACACAGAGCAGCATTCATTGTTTCAAACACTCAATAGTGAATCCCATTGCCATGATTTCTATCAGACAAACATTTCAGGAGCTAGCCTTAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTATTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCCCTTTTAGTCCCTGCTAGTGCCTTGGCAAATCTCATTCCCCAGACTTGCTCAGGCACTCCCATTGAGAGGGATTGGAAAGTTCAGGTGTATAGGTCAATTGACCATGTCTCTGCCAGCCAGTTGTTCAGAAATCTTACTGTGGAGAGGAGCATCCATGAAGCATATGTTGAAGCAATTAGGCGTGCCGATAGGTTTATATACATAGAAAACCAGTATTTCATTGGAGGGTGCCATTTGTGGGACAAAGACAAGCATTGTGGCTGCAGAAATTTGATTCCCATTGAGATTGCACTGAAGGTGGTAAGCAAGATTAAAGCAAAGGAGAGATTTGCAGTGTATATAGTGATTCCAATGTGGCCAGAAGGAGTGCCTGAGAGTGAACCAGTTCAGGACATTCTGCATTGGACCAGAGAAACAATGGCAATGATGTATAGTTTGATTGGAGAAGCAATTCAAGAAAGTGGGGAACCAGGGAACCCAAGAGACTACTTGAATTTCTTTTGCCTTGCAAATAGGGAACAGAAGGGAAAAGAAGAGTATCTTCCTCCACTTTCTCCTCATCCTGAAACACAATACTGGAATGCACAAAAAAGTAGAAGGTTCATGGTGTATGTCCACTCCAAGCTCATGATAGTGGACGACCTATACTTGATAATAGGGTCCGCTAATGTGAACCAAAGATCCATGGACGGGCAAAGAGACACTGAGATCGCCATAGGATGCTACCAGTCTCAAGATAATGCTGCTGATAGCCAAATGAGTCGTGGTGAGATTCATGCATACAGAATGTCACTGTGGTATGAGCACAGTGGCTGCGCAGATGAAGTGTTATTGGACCCGGAAAGCTTAGAGTGTGTACAGAGGATGCGTTCAATAGGAGATCAAATGTGGGGAATTTATAGCAGTGAAGAAATTGTGGACATGGAAAGCGTTCATCTTGTGACTTACCCTGTGAAGGTGACTCTAGAAGGTAATGTGGAGGAACTGGCTGATGCTGGCCATTTTCCTGATACAGGATGTCCAGTGAAGGGGAAGAGATCCAAAATGTTACCCCCTATCTTCACAACTTAA 2286 0.4344 MTMEGKPELLHGTIEVTIFNATPYASSFPFNCICANGKPAYVTINIDNQKVAKTSQERDRVWNQTFQIQCAHPTDSTITLTLKTSCSIMGRFHIQAQQLLKEESLINGFFPLLMENGKPNPQLKLRFILWFKPAELEPSWAKVLSIGEFQGLRDATFPQRSNCQVKLYHDAHHSSTFQPPFDLCGAPRRLWEDVYKAIEDAKYLIYIVAWSFNPRMVLVRDPQTEIPHARGVMLGELLRNKADEGVAVRVMLWDDETSLPIIKNKGVMKTHDEDAFAYFKYTKVICRKCPRSHHKFPTLFAHHQKTITVDTRSPNPANDRAIMSFVGGLDFCDGRYDTEQHSLFQTLNSESHCHDFYQTNISGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSLLVPASALANLIPQTCSGTPIERDWKVQVYRSIDHVSASQLFRNLTVERSIHEAYVEAIRRADRFIYIENQYFIGGCHLWDKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGVPESEPVQDILHWTRETMAMMYSLIGEAIQESGEPGNPRDYLNFFCLANREQKGKEEYLPPLSPHPETQYWNAQKSRRFMVYVHSKLMIVDDLYLIIGSANVNQRSMDGQRDTEIAIGCYQSQDNAADSQMSRGEIHAYRMSLWYEHSGCADEVLLDPESLECVQRMRSIGDQMWGIYSSEEIVDMESVHLVTYPVKVTLEGNVEELADAGHFPDTGCPVKGKRSKMLPPIFTT 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0405 761 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824
Glsi07g0405 761 Pfam Phospholipase D Active site motif 299 335 IPR001736 GO:0003824
Glsi07g0405 761 Gene3D Endonuclease Chain A 421 666 - -
Glsi07g0405 761 SUPERFAMILY Phospholipase D/nuclease 147 410 - -
Glsi07g0405 761 SUPERFAMILY Phospholipase D/nuclease 428 691 - -
Glsi07g0405 761 SMART pld_4 298 335 IPR001736 GO:0003824
Glsi07g0405 761 SMART pld_4 606 633 IPR001736 GO:0003824
Glsi07g0405 761 Gene3D Endonuclease Chain A 174 420 - -
Glsi07g0405 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Glsi07g0405 761 PANTHER PHOSPHOLIPASE D 9 743 IPR015679 -
Glsi07g0405 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 127 IPR035892 -
Glsi07g0405 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824
Glsi07g0405 761 Pfam C2 domain 40 112 IPR000008 -
Glsi07g0405 761 Gene3D C2 domain 4 132 IPR035892 -
Glsi07g0405 761 Pfam Phospholipase D C terminal 679 750 IPR024632 -
Glsi07g0405 761 PIRSF PLD_plant 3 761 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0405 Glsi-ChrGlsi07 2875763 2878920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0405 32 761 Phospholipase D Gene Family (Wang group) AT1G55180 63.428 0.0 982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0405 07 2875763 2878920 Glsi07g0405 07 2875763 2878920 ECH