LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g0404	ATGATTCATCATCAACCTCCAGATTCCATCGTGGTCGGAAAACTACGGGACAGGATCCGGGATGGGTGGCCCCGAAATCGAGTAAGCCCAGACGACGTCGTAGTGTCAGCGTCTAATCTAAAACCAACCACGAGGGGGTCAGAAGGAAAACGTTTGTTACCGGGAAAGGGTGCGAAGGGTCATTTCCGAAATAATCTTGCAAAACAAGGGCAGTTTCTTGCCCGACCTCTCGACGGCGATTTACGGCATCGCCTCTGCAAAATACTTGTTGATTTGGACTCTGATCGGTCAATGTATGTCTTGTGTGTTTACTTGCGTATTTCACCTTACCCTGTACAGCAAACAAGATTTGCGCTTTCTCGTAATTTTTGGTCCTTCTGCTTGGCTTCAATTCCACTCGATATTTCTTTCATTCTGTGCCATGGTGGTACTGATACCCAAATGATAGAGGAGAATGTACAGCAAAAGTTAAACCCTTTCGACAAGGCATTTTTCTTTTTTGGATTATTGGTGCTGATGAATCGAGAACAGATTCAACATAAGCGTGGGAAGGAAGAAAAGGGTTCTGATGGTGCTGAGAAGGTCATTGTTGCCGTCAAGGCATCAAAGGAAATCCCTAAGACCGCTCTTGTTTGGTCTCTAACTCATGTTGTTCAACCTGGTGATTGCATTACTTTGTTAGTGGTTGTGCCTTCACAAAGTTCAGGTAGAAGATTATGGGTATTTCCAAGATTTGCGGGTGACTGTGCCAGTGGTAACAAGAAATCTCCTTTAGGAACGAGTTCAGAGCAGAAGTGTGATATCACTGATTCTTGTTCTCAGATGATCCTTCAGCTCCATGATGTCTATGATCCAAATAAGATAAATGTAAACATTAAAATTGTTTCCGGATCACCTTGTGGAGCTGTAGCTGCGGAGGCCAAGAAAGCCCAAGCCAATTGGGTCGTATTAGACAGACAGCTCAAGCATGAGGAAAAGCGATGCATGGAAGAGCTGCAGTGCAACATTGTGGTTATGAAGCGTTCTCAACCGAAAGTGCTTCGCTTGAATTTGGTTGGATCACAAAAAAAGGATCTTGAAGAAGCAGTTCCTTTACCTTCTGGGCAAGATGAGATGCCTGGAAAACAAGCCAAGCAGAAGAATGACACTTTAAATTCCATAAAAGCACCAGTTGTCACTCCAACTAGCAGCCCGGAGCTAGGGACACCATTTACTGCAACTGAAGCTGGTACCTCATCAGTTTCAAGCTCAGATCCTGGAACCTCACCATTTTTTGTCTCTGAGATGAATGGTGAGTCAAAGAAAAAGGAAACAATCAAAGAAAATCAAGAACTTGATGATACTAATTCAGACACAGACAGTGAAAATCTGTCCACATCTTCGGTAAGCTTGAGATTCCAGCCATGGATGACAGACTTACTTTTACATCAACAGTCATCTCAGCACACGGAAGAAAGAAGTGAGAGATTTCATGATAAGCCTCAAGCATCTACAACCAGAGCCTTGCTAGAGAAGTTCTCAGGGCTTGACAGAGAATCTAGAATTGAATTCTCAACCCACAGAACTGACTCAGATTTCAGTGGAAATGTAAGAGAAGCAATAGCATTATCCAGAAACGCCCCCCCTGGTCCACCTCCATTATGTTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAATTGGAGCTTGCTACTGGTGGATTTTCAAAAGCCAACTTCTTGGCAGAGGGAGGATTTGGATCTGTTCACAGAGGGGTTCTACGAGATGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGATCTTGAATTTTGCTCAGAGGTAGAAGTCTTGAGCTGTGCTCAGCATCGAAATGTTGTTATGCTAATCGGGTTCTGTATAGAAGATAAGAGAAGGCTACTGGTTTATGAGTATATATGCAATGGATCTCTGGATTCTCATTTATATGGGAGACAACAGGATCCATTAGAGTGGTCTGCGAGGCAAAAAATTGCTGTTGGAGCTGCTCGAGGGCTGCGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCACCGTGACATGCGGCCAAACAACATTCTCATAACCCATGATTTTGAACCACTGGTTGGTGATTTTGGATTGGCAAGGTGGCAGCCTGATGGAGACACAGGCGTGGAAACTAGAGTAATTGGAACATTTGGATATTTGGCTCCAGAATATGCTCAAAGCGGCCAAATCACTGAAAAGGCTGATGTTTATTCCTTTGGAGTGGTATTAGTAGAGCTTGTCACTGGGCGGAAAGCTGTGGATCTCAATCGACCTAAAGGACAGCAGTGTCTTACTGAGTGGGCACGACCGCTGTTAGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTGGGGATTGACTTTTCAGAACAAGAGGTCTATTGCATGCTGCATGCTGCCTCATTATGCATACGGCGAGATCCTCATTCTAGACCCCGCATGTCACAGGTTCTCCGAATACTAGAAGGCGACATGGTCATGGACACTAATTACCTATCAACTCCCACTTATGATGTGGGGAACCGGAGTGGTCGGATCTGGGCGGAGCAGCAGCAGGTGAGGCAGCACCATTACAGTGGACCCCTGTTGGATGAGTCACTGGAAGCGTTCAGTGGGAAGCTGTGTCTGGAGAAATACAGGCCTGCCTATTGGGAAAGAGACAAGCATAGGAGGACTTCATGTGAAGATGAAATGTGA	2775	0.4494	MIHHQPPDSIVVGKLRDRIRDGWPRNRVSPDDVVVSASNLKPTTRGSEGKRLLPGKGAKGHFRNNLAKQGQFLARPLDGDLRHRLCKILVDLDSDRSMYVLCVYLRISPYPVQQTRFALSRNFWSFCLASIPLDISFILCHGGTDTQMIEENVQQKLNPFDKAFFFFGLLVLMNREQIQHKRGKEEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWVFPRFAGDCASGNKKSPLGTSSEQKCDITDSCSQMILQLHDVYDPNKINVNIKIVSGSPCGAVAAEAKKAQANWVVLDRQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLVGSQKKDLEEAVPLPSGQDEMPGKQAKQKNDTLNSIKAPVVTPTSSPELGTPFTATEAGTSSVSSSDPGTSPFFVSEMNGESKKKETIKENQELDDTNSDTDSENLSTSSVSLRFQPWMTDLLLHQQSSQHTEERSERFHDKPQASTTRALLEKFSGLDRESRIEFSTHRTDSDFSGNVREAIALSRNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSKANFLAEGGFGSVHRGVLRDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQQDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLGIDFSEQEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDMVMDTNYLSTPTYDVGNRSGRIWAEQQQVRQHHYSGPLLDESLEAFSGKLCLEKYRPAYWERDKHRRTSCEDEM	924

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g0404	924	MobiDBLite	consensus disorder prediction	479	495	-	-
	Glsi07g0404	924	MobiDBLite	consensus disorder prediction	477	497	-	-
	Glsi07g0404	924	FunFam	Dual-specific kinase DSK1-like	186	340	-	-
	Glsi07g0404	924	MobiDBLite	consensus disorder prediction	378	428	-	-
	Glsi07g0404	924	ProSiteProfiles	Protein kinase domain profile.	577	858	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g0404	924	MobiDBLite	consensus disorder prediction	360	459	-	-
	Glsi07g0404	924	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	698	710	IPR008266	GO:0004672\|GO:0006468
	Glsi07g0404	924	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	549	652	-	-
	Glsi07g0404	924	MobiDBLite	consensus disorder prediction	430	447	-	-
	Glsi07g0404	924	CDD	STKc_IRAK	583	849	-	-
	Glsi07g0404	924	Gene3D	Transferase(Phosphotransferase) domain 1	653	859	-	-
	Glsi07g0404	924	PANTHER	OS01G0750732 PROTEIN	332	855	-	-
	Glsi07g0404	924	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	653	856	-	-
	Glsi07g0404	924	Gene3D	Phosphorylase Kinase; domain 1	549	652	-	-
	Glsi07g0404	924	SUPERFAMILY	Protein kinase-like (PK-like)	561	861	IPR011009	-
	Glsi07g0404	924	Pfam	Protein tyrosine and serine/threonine kinase	581	846	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g0404	Glsi-ChrGlsi07	2860580	2871563	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g0404	564	848	Trihelix Transcription Factor Family	AT5G38560	52.577	7.10e-98	320

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Glsi07g0404		PK_Tyr_Ser-Thr	3.2e-41	CL0016