Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0400 ATGGCGCCAAGTCCAAGTAGTGTGATTGATGGCTTAGTAGAGGCTGCTGTGCTGAGAAGGCAGAAAACTACTCAAGCTTCGAAAATGGGTACTTTGGCAGCACAACAGGATGTTCTTGCAGAGAGAAAATGCATTATCCTGCCTGTTAAAAGGGATAAGACACTTTCTGTTGTCACTCCAATCTCCATTTTATTTTTGACATTTTGCTTGTTTAAATGTAGAAGTTCAAAAGAGGAAGGGTATGGTTGTGCTGAAAGTTGTTTGATCAGAAGAAGTCCTGCAAGTAATAGCCGTGGAAATGGATGGGTTTCCACCGTTGGGTGGGAAGGATTTGAAGAGACTGTGTGTTGTGGAGATAGCAAACCACATCAAGCTCCGAAAATGGATTACTTTGGCAGCTCAATAGGGGACATCTCCCAGATTTGTTTCAGAGAGTTCGATTTTACTTCAATTTGCACCCAAAGGAGTATAATAGACGTTGTAAATCTGCTTTTCCTCTCAGTTTTCTATTTATCTTTGCTCACCAATTTGATCAGAAAAAATCCTACGCGTAATAGCTGTGGAAAGGGATGGGTTTCCACAGTTGCGTCAGTCTGCTGTGCTCTTATTAGCATGACATATTTTACTAATGGTTTGTGGAATTTCGTTGCCAAAACTGGTGACTTCAATACGCTGAACTGGTTGGTTTACATCATTAGAGGACTAGTTTGGATTTCTTTATCAGTTTCTTTGCTTCTTCAGAGATCCAAATGGATAAAAACTTTTAACTTTAATTGGTGGGTCTCCTTATGTATACTGGTTTCAGCTCTCAATATAGAAATTCTGTTCAAAAAGCAACCACTTCAAATTCTTGATATTGTGCAATGGCCTCTACACCTTTTACTTGTCTTCTGTGCGTTCCAAAACCTTGGTTACTTTGTCCCTCAGCGTATCCCAGAAATCAGTATCTTTGAGCCTCTGTTAGCTCAAAAGATTGAAGATAATAAAACAAGAATAGGCCAAGCAACATTACTTAGCAAATTGACTTTCTCTTGGATTAATCCTCTTCTCAGCTTTGGTTACTTAAACCCTCTAGCTCTTGAAGACATCCCTTCTCTGGTTTCTGAAGATGAATCTCATTTAGCTTACCAAAAGTTTGCTTATGCATGGGATTTGCTTTTGCATGACAGGAACAATGCCAAAAACCTAGTTCTTTGGTCCATAGCCAAAGTTCACTTAAAAGAGAACTTATTAATAGCAATTTACGCATTTCTCAGGACAATCTCTGTTGTAGTTTCTCCTCTGATACTCTATGGATTTGTGAACTATACAAATCGCAATGAGCAAGGCTTGAAAGAAGGTCTTTACTTAGTTGGGTATCTGATTGTTACCAAGATGGTTGAGTCTTTGTCCCAGAGGCACTGGTTTTTTTATGCAAGGAGGTCAGGAATGAAAATGAGATCAGCTCTAATGGTAGCAGTCTACAAAAAGGTGCTAAAGCTTTCAAGTCCAGCAAGGAGAAGGCAATCAACAGGGGAGATTGTGAATTACATTGCAGTTGATGCCTATCGAATGGGTGATTTTCCATGGTGGTTTCATGCAACATGGACAAGCGCAGTTCAACTTGTTCTCAGTTTTGTTGTGCTTTTTGGTGTTGTGGGTATTGGTGCACTTCCTGGTTTAGTCCCTCTTCTTATCTGTGGGATGCTCAATGTCCCATTTGCAAAAATCCTACAAAAGTGTCAGTCAGAATTTATGATTGCACAGGATGAGCGTCTAAGATCATTTTCTGAAATTCTAAATAGTATGAAAATCATAAAGTTACAATCCTGGGAGGATAAATTTAAGAACTTGGTCGAATCCCTTCGTAGTAAAGAGGTCAAGTGTTTGACTGAGGCACAGTTCATGAAAGCTCATGGGACCTTTATGTATTATATGTCTCCTACCATTATTTCATCGATTATTTTTATCGGATGTGCAATATTTCGGAGTGCCCCATTGAATGCCGAGACAATCTTCACTGTTCTTGCAACCTTGAAGGTCATGGGAGAACCCGTTAGGGTGATCCCAGAGGCTCTTTCCATCATGATCCAAGTTAAGGTCGCCTTTGGCCGTCTCAACACCTTTTTGCTTGAAGATGAGATAGAAAATGATGATATTGAAAGAATCCTGAATCAAAATTCAGTTAGCAGCATTGAAATTCAAGCGGGCAATTTCAGTTGGGATCAGGAATCAGTGTCCCCAACTTTAACAGAGGTGAATTTGGAAATCAAATGGGGGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTCTTATATGCAATGCTCAGAGAGATACCCAAAATTTCAGGAAGTGTTAATGTAGGTGGAACTCTTGCCTACGTTTCTCAAACTTCCTGGATCCAAAGTGGGACAATTCGTGATAATATACTCTACGGAAAGCCAATGGACAAAACCAGATATGAGAATGCTATAAATGTGTGTGCCTTGGATAAGGATATTAATAACTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGGTTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTTGCTCGTGCCGTCTATAATGATGCTGACATATATCTTCTTGATGATCCTTTCAGTGCAGTTGATGCACATACTGCTGCTATTCTGTTCCACGATTGCGTCATGACTACTCTAAGAGAGAAAACAGTCATTCTAGTCACTCATCAAGTCGAGTTTCTCTCAGAAGTTGATAAAATTCTGGTAATGGAGCAAGGGAAAGTTACTCAATCAGGTGGCTATGAGGAACTCTTGTTAACTGCGACAGCTTTTGAACAACTCGTGAATGCTCATAGAGATTCAATTACAAGAGTGGAGCAAAATAATGAAAGCCAAGTTGAGCCCGTAAAAGTAGATTTAGATCAGCCAGAGGAGGCACATGGTTTTCGTATCATGAAAGATCTGAGTGAGGCTGAGATTTCTACCCAGACACAACTTACAAAAGAAGAAGAAAAGGAGACTGGTGATGTTGGTTGGAAGCCATACTGGGATTATATCTATATCTCCAAGGGATCATTGTTTCTATCTTTGAGCTTATTAGCACAGGTGGTTTTTATTGCTTTGCAGGCTGCATCAAGCTTTTGGCTAGCTCTAGCCATTGAAATCCCAAAAGTAACTAGTATCATTTTTGTGGGAATTTATGCGGTTATTTCATTTCTTAGTGTTTTCTCTGTATACCTAAGGGATTTTTGTGCTGCATATCTTGGATTAAAAGCTTCTACAGCCTTCTTCTCTGGTTTTATTAATTCAATCTTTAATGCTCCTATGTTGTTCTTCGACTCAACCCCTGTGGGGCGGATTTTGACCCGAGCTTCATCAGATTTCAGTATTCTAGACTTTGATATACCTTTCTCCCTCAACTTTGCAGCATCTACAGTAATCGAACTTCTGGCAATGATTGGGATAATGACTTCTGTCACATGGCAAGTCCTCATTGTTGCTGTTCTTGCTATGGTGACTTCATTATATATACTGAATTACTATCAATCCTCTGCAAGGGAACTAATAAGAATTAATGGAACCACAAAAGCTCCAATTATGAATTTTACATCTGAGACATCCCTTGGAGCAGTAACGGTAAGAGCTTTCAACATGGCAGACAGATTTTTCCAAAACTTCCTAAAGCTTGTGGACACAGATGCAACACTCTCCTTTCACTCTAATGCTGCCATGGAATGGCTACTTCTGAGGATTGAAGCACTTCAGAATTTGACACTCTTCACTGCTGCTCTTTTGCTTGTTTTACTTCCAAAGGGATACGTGGCCCCTGGCCTTGTGGGACTTTCTCTTTCTTATGCTTTGGCACTTGCAGCAACCCAAGTTTTTTTGTCTAGATGGTTTTGCAGCTTATCGAACTATATTATCTCTGTCGAAAGAATCAAGCAATTCATTCACATACAGGCAGAGCCTCCTTCAATTGTGGAGAACAAGAGGCCTCCCTCTTCTTGGCCTTCCAGGGGTAGGATAGATCTTCAAGCCCTGAAGATCAGATATCATCCAAATGCTCCATTAATCCTTAAGGGGATCACTTGCACGTTTAAAGAAGGGAGCAGAGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAACAACACTTATAAGTGCTTTGTTTCGCTTAGTTGAACCTTCAGGTGGAAATATTCTTATAGATGACCTTGACATATGCTCAATCGGGCTCAAAGATTTGAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAGGGGTAGTGTTAGAACCAACTTGGATCCTCTGGGCCTGTACACTGATGATGAAATATGGCAGACTTTAGAGAAATGTCAGCTTAAGGCAACAATCAGCAGTCTGCCAAAACTGTTAGACTCTTCTGTAAGTGATGAAGGTGAAAATTGGAGTGTGGGACAGCGCCAACTCTTTTGTCTAGGAAGAGTTCTTCTAAAGAGGAATAGAATTCTTGTTCTAGATGAAGCTACTGCTTCCATTGACTCAGCCACAGATGCCATTCTTCAGCGAGTTATAAGGCAGGAATTTGCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACAGTAATAGATAGTGACATGGTCATGGTTCTCTCTTATGGGGAGCTAGTGGAGTATGATGAGCCTTCAAAGCTTATGGAGACTAACTCTTCGTTTTCTAAGCTGGTGACTGAGTATTGGTCCAGCTGCAAGAGAAGTTCCTTCTAG 4755 0.4046 MAPSPSSVIDGLVEAAVLRRQKTTQASKMGTLAAQQDVLAERKCIILPVKRDKTLSVVTPISILFLTFCLFKCRSSKEEGYGCAESCLIRRSPASNSRGNGWVSTVGWEGFEETVCCGDSKPHQAPKMDYFGSSIGDISQICFREFDFTSICTQRSIIDVVNLLFLSVFYLSLLTNLIRKNPTRNSCGKGWVSTVASVCCALISMTYFTNGLWNFVAKTGDFNTLNWLVYIIRGLVWISLSVSLLLQRSKWIKTFNFNWWVSLCILVSALNIEILFKKQPLQILDIVQWPLHLLLVFCAFQNLGYFVPQRIPEISIFEPLLAQKIEDNKTRIGQATLLSKLTFSWINPLLSFGYLNPLALEDIPSLVSEDESHLAYQKFAYAWDLLLHDRNNAKNLVLWSIAKVHLKENLLIAIYAFLRTISVVVSPLILYGFVNYTNRNEQGLKEGLYLVGYLIVTKMVESLSQRHWFFYARRSGMKMRSALMVAVYKKVLKLSSPARRRQSTGEIVNYIAVDAYRMGDFPWWFHATWTSAVQLVLSFVVLFGVVGIGALPGLVPLLICGMLNVPFAKILQKCQSEFMIAQDERLRSFSEILNSMKIIKLQSWEDKFKNLVESLRSKEVKCLTEAQFMKAHGTFMYYMSPTIISSIIFIGCAIFRSAPLNAETIFTVLATLKVMGEPVRVIPEALSIMIQVKVAFGRLNTFLLEDEIENDDIERILNQNSVSSIEIQAGNFSWDQESVSPTLTEVNLEIKWGQKIAVCGPVGAGKSSLLYAMLREIPKISGSVNVGGTLAYVSQTSWIQSGTIRDNILYGKPMDKTRYENAINVCALDKDINNFSHGDLTEIGQRGVNMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFHDCVMTTLREKTVILVTHQVEFLSEVDKILVMEQGKVTQSGGYEELLLTATAFEQLVNAHRDSITRVEQNNESQVEPVKVDLDQPEEAHGFRIMKDLSEAEISTQTQLTKEEEKETGDVGWKPYWDYIYISKGSLFLSLSLLAQVVFIALQAASSFWLALAIEIPKVTSIIFVGIYAVISFLSVFSVYLRDFCAAYLGLKASTAFFSGFINSIFNAPMLFFDSTPVGRILTRASSDFSILDFDIPFSLNFAASTVIELLAMIGIMTSVTWQVLIVAVLAMVTSLYILNYYQSSARELIRINGTTKAPIMNFTSETSLGAVTVRAFNMADRFFQNFLKLVDTDATLSFHSNAAMEWLLLRIEALQNLTLFTAALLLVLLPKGYVAPGLVGLSLSYALALAATQVFLSRWFCSLSNYIISVERIKQFIHIQAEPPSIVENKRPPSSWPSRGRIDLQALKIRYHPNAPLILKGITCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPSGGNILIDDLDICSIGLKDLRMKLSIIPQEPTLFRGSVRTNLDPLGLYTDDEIWQTLEKCQLKATISSLPKLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGELVEYDEPSKLMETNSSFSKLVTEYWSSCKRSSF 1584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0400 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 948 IPR027417 -
Glsi07g0400 1584 CDD ABC_6TM_ABCC_D2 1032 1315 IPR044726 GO:0140359
Glsi07g0400 1584 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 727 948 IPR003439 GO:0005524
Glsi07g0400 1584 Pfam ABC transporter 1357 1505 IPR003439 GO:0005524
Glsi07g0400 1584 ProSitePatterns ABC transporters family signature. 850 864 IPR017871 GO:0005524|GO:0016887
Glsi07g0400 1584 SUPERFAMILY ABC transporter transmembrane region 398 707 IPR036640 GO:0005524|GO:0016020
Glsi07g0400 1584 CDD ABCC_MRP_domain1 725 925 - -
Glsi07g0400 1584 Gene3D ABC transporter type 1, transmembrane domain 397 702 IPR036640 GO:0005524|GO:0016020
Glsi07g0400 1584 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1342 1574 IPR003439 GO:0005524
Glsi07g0400 1584 FunFam Multidrug resistance protein associated1 704 968 - -
Glsi07g0400 1584 SUPERFAMILY ABC transporter transmembrane region 1013 1322 IPR036640 GO:0005524|GO:0016020
Glsi07g0400 1584 CDD ABC_6TM_ABCC_D1 411 699 IPR044746 GO:0140359
Glsi07g0400 1584 CDD ABCC_MRP_domain2 1338 1558 - -
Glsi07g0400 1584 Gene3D - 1323 1574 IPR027417 -
Glsi07g0400 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1330 1573 IPR027417 -
Glsi07g0400 1584 SMART AAA_5 1366 1551 IPR003593 GO:0016887
Glsi07g0400 1584 SMART AAA_5 752 925 IPR003593 GO:0016887
Glsi07g0400 1584 Pfam ABC transporter 743 877 IPR003439 GO:0005524
Glsi07g0400 1584 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 334 1576 - -
Glsi07g0400 1584 Pfam ABC transporter transmembrane region 414 672 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi07g0400 1584 Pfam ABC transporter transmembrane region 1028 1283 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi07g0400 1584 FunFam ABC transporter C family member 5 989 1321 - -
Glsi07g0400 1584 FunFam ABC transporter C family member 10 393 707 - -
Glsi07g0400 1584 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 410 691 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi07g0400 1584 Gene3D - 703 971 IPR027417 -
Glsi07g0400 1584 FunFam ABC transporter C family member 3 1323 1574 - -
Glsi07g0400 1584 Gene3D ABC transporter type 1, transmembrane domain 988 1320 IPR036640 GO:0005524|GO:0016020
Glsi07g0400 1584 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1028 1303 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0400 Glsi-ChrGlsi07 2806119 2815924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0400 725 936 Calmodulin-binding Proteins AT2G36910 29.204 1.08e-21 100