Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0381 ATGGATGGTCTGAATTGGGATGGCTCCCAACTTGTGGAGAACATACCCATGTTGTGGAACATTGAGCAACAAGAACTTGAAGCAGGATACTCCATGACCAACTTAAATCCAAGTTTTTTTTATCAAATTCAAGATCAGATGCAGAAGGCTCAAACAGGTAATAATATTCTGGATTCAAATTCTGGAAAACTGAGTGACACGATTCAATCAGAAGCAGCTCCCACTTCAGAGATCGTAATGAATGTGATGCCAAAGACAAATCTGTCACAGCTAGCAGCAACCTTTCCAGTTAGTAATTTTGTGCCAGATTTCAACATGGCCCACCACCACGAACAACAACGACAACTTGTCAATGGCTCACAAAATGGCAAAGCTATTATTGCGGCTACCTGCTCTGCTGAGTCACTAGATTGCTCGTTCTCAGTTCAAAATAGCAAAACTGACACTTCCGTGGAAGATGATGGAATTTCCATGATTTTATCTGACTGCAGAAAAAACTTGTGGAACTTCAGCTTTGGAAGCAGAATTTCGTCAGGAGAATCTGAGAGCAACGCTTCCAATGGAAGAACTATGAACAAAGATATGCAGCCAGTCAACGAACTTGAAGAAACTGTGTCCCAGAGTTCTTCAGATCTTTATGTCAATCAGGGAAAAATTGTAGAATCCAAGACTAATTGTACAAAAAGGCTAATTGATGATGCCTTCGATCCTGGCTACTTCAGTATTGTTCAGAATTCTTCTTCTGATACTACTGAAGGTGGTTTCAGGCTCATTTCAGAGAATCCACCAAAAATCAAAAGACCCAGATGGGAGAAGCCTCCAACTTCATCTAATATCAATTTCCAGCGGCCAAATTCATCTGTGTCATCTTCCATGGAAGAACCTGACCCAGATGCCATAGCACACATGAAAGAGATGATATATAGAGCTGCGGCTTTTAGGCCTGTGAACTTAGGCTTGGAGGCGGTGGAAAAGCCCAAGAGGAAGAATGTGAGGATATCATCAGATCCACAAACTGTGGCTGCAAGGATAAGGAGGGAGAGAATAAGTGAGAGAATTAGGGTTTTGCAGAATCTAGTGCCTGGTGGAAGCAAGATGGACACCGCTTCAATGCTTGATGAAGCTGCAAACTACCTTAAGTTTCTCAGGTCCCAGGAAAGGAAAGGCCATTTTTCTTCCACAGGTCTTGCGAAGGCTTTCACTGACACTTCAAGAGATGCGATACATGACCGATATCAAGATGAAAATATGTGGTTTCTGCTTGGAGCTGGTATTTTTTGTTTGGCTCTTCAATTTAAAACTATAGATGGAGTTGAAGGTGTTAAGGATTGGAGAAATAGGAAGGGTGGTCTTGATTGGACCAAAATTAAGGCGGCTACGGAAGTTGGGTTCCTTACTAAATTTAGACATTCGGTTGTGAAAAGGGATCAGATATTTCGCTTGGTTTTGTCTAATTTGGTTGCTGAATCAAGAAGGGGTCCCAGAATAACCAATTTGCGTTTGCTGAACTCATTCTTTTGTAGGCTTTCACAAGTTGGAGAGATTTGA 1548 0.4173 MDGLNWDGSQLVENIPMLWNIEQQELEAGYSMTNLNPSFFYQIQDQMQKAQTGNNILDSNSGKLSDTIQSEAAPTSEIVMNVMPKTNLSQLAATFPVSNFVPDFNMAHHHEQQRQLVNGSQNGKAIIAATCSAESLDCSFSVQNSKTDTSVEDDGISMILSDCRKNLWNFSFGSRISSGESESNASNGRTMNKDMQPVNELEETVSQSSSDLYVNQGKIVESKTNCTKRLIDDAFDPGYFSIVQNSSSDTTEGGFRLISENPPKIKRPRWEKPPTSSNINFQRPNSSVSSSMEEPDPDAIAHMKEMIYRAAAFRPVNLGLEAVEKPKRKNVRISSDPQTVAARIRRERISERIRVLQNLVPGGSKMDTASMLDEAANYLKFLRSQERKGHFSSTGLAKAFTDTSRDAIHDRYQDENMWFLLGAGIFCLALQFKTIDGVEGVKDWRNRKGGLDWTKIKAATEVGFLTKFRHSVVKRDQIFRLVLSNLVAESRRGPRITNLRLLNSFFCRLSQVGEI 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0381 515 MobiDBLite consensus disorder prediction 251 296 - -
Glsi07g0381 515 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 144 385 IPR045843 GO:0003700|GO:0006355
Glsi07g0381 515 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 382 IPR011598 GO:0046983
Glsi07g0381 515 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 388 IPR036638 GO:0046983
Glsi07g0381 515 Gene3D - 338 391 IPR036638 GO:0046983
Glsi07g0381 515 SMART finulus 339 388 IPR011598 GO:0046983
Glsi07g0381 515 Pfam Helix-loop-helix DNA-binding domain 343 382 IPR011598 GO:0046983
Glsi07g0381 515 MobiDBLite consensus disorder prediction 273 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0381 Glsi-ChrGlsi07 2665197 2668203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0381 98 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.485 3.60e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi07g0381 HLH 7.4e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0334 06 2771229 2775940 Glsi07g0381 07 2665197 2668203 CCT
Glsi07g0381 07 2665197 2668203 Glsi07g0381 07 2665197 2668203 ECH