Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0370 ATGTATCAGTCTTCTGCAATGGGAAGAAAAAAGACAGAGGACGGTGGCCCTGGCACAAAGGCTAAGCCAAGTGGCAAAGATGCTTCTAAGAAGGAAAAATTCTCTGTCTCTGCCATGCTGGCCAATATGGATGAAAAACCTGATAAACCCCAGAAAGTCTCCTCTTCCTCTAGTAAGCCCAAGGCAAAATCTGTTCCAAAAGCTTCTGCATACACTGATGGTATTGATCTCCCTCCCTCTGATGACGAAGAAGATGATCTTATTCTAAAGGAGCAACAGAAAAATAATGTGCACAAGCGATCCACTCAGCAGCAGAGGCCTGACCTAAAGCCACTTGATGTATCTATTTCTGACAAAGAGTTAAAAAAACGTGAAAAGAAAGATCTTCTTGCTGCCCATGTTGCGGAGCAGGCAAGGCAGGAAGCTCTTAAGGATGACCATGATGCTTTTACTGTGGTCATTGGAAGCCGTACTTCAGTGCTTGATGGAGAAGACGATGTTGATGCTAATGTGAAAGATGTAACAGTTGAAAATTTCTCTGTGTCAGCTAGGGGTAAAGAACTTCTGAAGAATGCGTCTGTGAGGATATCTCATGGGAAGAGGTATGGTTTGGTTGGGCCAAATGGAAAGGGCAAGTCCACACTATTGAAACTTCTTGCTTGGAGGAAGATACCAGTACCAAAGAATATTGATGTGCTTCTGGTTGAACAGGAGGTAGTTGGCGATGATAAAACGGCACTTGAAGCAGTTGTTTCAGCTAATGAAGAACTTGTTAAAACCCGACAAGAAGTTGCTTCTCTACAGAATGCAACTTCTGTTGAAGGAAGTGATGAAAAAGATGATAATTATGGAGATGATGCAGGAGAGAAGCTCGCTGAACTGTATGAAAAATTACAGCTGATGGGTTCTGATGCTGCTGAAGCACAAGCATCAAAGATTCTTGCTGGTTTGGGTTTTACAAAGGATATGCAGGGTCGTCCTACAAAATCATTTAGTGGTGGTTGGAGGATGAGAATTTCTTTAGCTAGAGCACTGTTTTTGCAGCCAACACTGTTGTTGCTTGATGAACCTACAAATCATCTTGATCTGAGGGCTGTTCTCTGGTTGGAGGAGTACTTGTGCCGTTGGAAGAAGACTTTGGTGGTCGTCTCACATGATAGGGATTTCCTCAATACAGTTTGCAATGAGATAATTCATTTGCATGATTTGAAACTCCATTTCTATCGTGGAAATTTTGATGATTTTGAAAGTGGTTATGAGCAGCGTCGTAAAGAGATGAACAAGAAGTATGAGATTTATGACAAGCAGATGAAAGCAGCCAAAAGGAGTGGAAATCGGGCTCAGCAGGAAAAGGTGAAGGATCGAGCTAAGTTTGCAGCTAAGGAAGCATCAAAAAGCAAGGGCAAGGGCAAGGTTGATGAGGATGAAGTTCCAGCAGATGTGCCACAAAAGTGGAGGGATTACAGTGTTGAGTTTCACTTTCCTGAACCTACTGAGCTCACACCTCCCCTTCTGCAACTTATTGAAGTTAGTTTCAGCTACCCAAATCGAGAGGATTTTAGACTCTCAAATGTTGATGTTGGTATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGGAAATCTACGCTGCTAAATCTTCTTGCTGGCGATTTGGTTCCAACTGAGGGAGAAGTTCGAAGGAGTCAGAAGTTGAGGATTGGAAGATATTCCCAGCACTTTGTGGACCTTCTCACAATGGATGAAACGCCTGTTCAGTATCTTCTTCGTCTCCATCCGGATCAGGAAGGACTTAGCAAGCAGGAGGCTGTTCGAGCAAAGCTTGGTAAGTTTGGACTCCCTAGCCATAACCATCTTACCCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCAATATCCATGTCAAAGCCCCACATTTTGCTGTTGGATGAACCCACTAATCATTTAGATATGCAAAGTATCGATGCATTAGCTGATGCACTGGATGAATTCACTGGAGGAGTTGTTCTTGTGAGTCATGATTCCAGATTGATATCCCGTGTGTGCGAGGATGAAGAGAGGAGTCAAATCTGGGTAGTTGAGGATGGTACAGTCAGAACCGTCGATGGAACTTTTGATGATTACAAAGAGGATTTGATGAGAGAAATTAAAGCTGAAGTGGATGATTGA 2199 0.4338 MYQSSAMGRKKTEDGGPGTKAKPSGKDASKKEKFSVSAMLANMDEKPDKPQKVSSSSSKPKAKSVPKASAYTDGIDLPPSDDEEDDLILKEQQKNNVHKRSTQQQRPDLKPLDVSISDKELKKREKKDLLAAHVAEQARQEALKDDHDAFTVVIGSRTSVLDGEDDVDANVKDVTVENFSVSARGKELLKNASVRISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKTRQEVASLQNATSVEGSDEKDDNYGDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFLQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCNEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQMKAAKRSGNRAQQEKVKDRAKFAAKEASKSKGKGKVDEDEVPADVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVRTVDGTFDDYKEDLMREIKAEVDD 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0370 732 Coils Coil 250 270 - -
Glsi07g0370 732 FunFam ABC transporter F family member 4 172 455 - -
Glsi07g0370 732 ProSitePatterns ABC transporters family signature. 331 345 IPR017871 GO:0005524|GO:0016887
Glsi07g0370 732 Gene3D - 472 732 IPR027417 -
Glsi07g0370 732 Coils Coil 423 443 - -
Glsi07g0370 732 MobiDBLite consensus disorder prediction 87 117 - -
Glsi07g0370 732 CDD ABCF_EF-3 505 707 - -
Glsi07g0370 732 Gene3D - 171 456 IPR027417 -
Glsi07g0370 732 MobiDBLite consensus disorder prediction 1 117 - -
Glsi07g0370 732 SMART AAA_5 531 707 IPR003593 GO:0016887
Glsi07g0370 732 SMART AAA_5 198 403 IPR003593 GO:0016887
Glsi07g0370 732 FunFam ABC transporter F family member 4 470 732 - -
Glsi07g0370 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 718 IPR027417 -
Glsi07g0370 732 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 174 427 IPR003439 GO:0005524
Glsi07g0370 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 433 IPR027417 -
Glsi07g0370 732 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 147 725 - -
Glsi07g0370 732 CDD ABCF_EF-3 174 404 - -
Glsi07g0370 732 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 505 730 IPR003439 GO:0005524
Glsi07g0370 732 MobiDBLite consensus disorder prediction 442 478 - -
Glsi07g0370 732 Pfam ABC transporter 189 359 IPR003439 GO:0005524
Glsi07g0370 732 Pfam ABC transporter 522 657 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0370 Glsi-ChrGlsi07 2511916 2515093 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0370 504 717 Calmodulin-binding Proteins AT2G36910 29.167 1.43e-14 76.3