Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0348 ATGACTCGGCGGTGCTCTCATTGTAGCAACAACGGGCACAACTCCCGGACATGCCCGTCTCGTGTTGGTGGAGGCGTGAAGCTTTTCGGTGTGAGACTCACAGATGGATCAATCATCAAAAAGAGCGCCAGCATGGGCAACCTCTCCGCTCTTTATCATTCTTCTTCGTCCGTCTCTGGATCACCAAATGCCAGCTCGCCCAGCTTCGACCCGGTTCACGAACCTGACGGGTACTTGTCCGATGACCCTGCTCACGCCTCCAGTTTCGCAAACCGTCGTGGAGAAAGAAAGAAAGGTGTTCCATGGACCGAAGAAGAACATCGGCTATTCTTAATTGGTCTCCAGAAACTGGGTAGAGGAGACTGGCGTGGAATAGCACGCAATTTTGTCATGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTACTTTATCCGGCACAGTAATACTGCCCGGAGAAAGAGACGTTCCAGCCTCTTTGACATGGCTCCAGATTTGGTTGAAGAACAAGCATTATTGCCACCTTTTGAGAACTCACAACCTGGTAGTGCAAAATCGCAATCTGGAAGTGCAAAATCACTACCATCATTAAATCTCTCTCTCAAGTCAGAATTTGAACCCATCAAAACTACTACTCAAGAAAATGCAGAAGAGTCCAATGAAACTGTGACGAGATCAAGTGAATTGACCCCAATGGCTCCTGGGTTCTTCCATGCTTATGTACCTGTCACATTTTCCCTATGGCCATCAAGTGCAGGATCCTTTGAAGAGGTTAATAGAGCAGAAACATCTCATCATCAGGTCTTCAAGCCGATTCCGATCATTCCCAAGGAACCTGTCAATGTAGATGAACTTGTTGGCATGTCTCAGCTAAGTCTTGGAGAAACAGTGGTGCTTGATAGAGAGCCTTCTCCACTTTCCTTAAAGTTGCTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATCCAAATGCTCCAGTTGGAAGTGCAGATTTAAGCAATGGCAAGAATAGTGCAATTCAAGCAATTTGA 1035 0.4725 MTRRCSHCSNNGHNSRTCPSRVGGGVKLFGVRLTDGSIIKKSASMGNLSALYHSSSSVSGSPNASSPSFDPVHEPDGYLSDDPAHASSFANRRGERKKGVPWTEEEHRLFLIGLQKLGRGDWRGIARNFVMSRTPTQVASHAQKYFIRHSNTARRKRRSSLFDMAPDLVEEQALLPPFENSQPGSAKSQSGSAKSLPSLNLSLKSEFEPIKTTTQENAEESNETVTRSSELTPMAPGFFHAYVPVTFSLWPSSAGSFEEVNRAETSHHQVFKPIPIIPKEPVNVDELVGMSQLSLGETVVLDREPSPLSLKLLGEPSRQSAFHPNAPVGSADLSNGKNSAIQAI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0348 344 PANTHER TRANSCRIPTION FACTOR KUA1 3 240 - -
Glsi07g0348 344 CDD SANT 101 146 IPR001005 -
Glsi07g0348 344 MobiDBLite consensus disorder prediction 1 20 - -
Glsi07g0348 344 MobiDBLite consensus disorder prediction 210 229 - -
Glsi07g0348 344 SMART sant 98 148 IPR001005 -
Glsi07g0348 344 SUPERFAMILY Homeodomain-like 96 151 IPR009057 -
Glsi07g0348 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 150 IPR017930 -
Glsi07g0348 344 MobiDBLite consensus disorder prediction 177 196 - -
Glsi07g0348 344 FunFam transcription factor MYB1R1 100 151 - -
Glsi07g0348 344 Gene3D - 100 151 - -
Glsi07g0348 344 MobiDBLite consensus disorder prediction 319 344 - -
Glsi07g0348 344 ProSiteProfiles SANT domain profile. 102 150 IPR017884 -
Glsi07g0348 344 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Glsi07g0348 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
Glsi07g0348 344 MobiDBLite consensus disorder prediction 1 18 - -
Glsi07g0348 344 MobiDBLite consensus disorder prediction 52 68 - -
Glsi07g0348 344 MobiDBLite consensus disorder prediction 52 100 - -
Glsi07g0348 344 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Glsi07g0348 344 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0348 Glsi-ChrGlsi07 2343191 2349088 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi07g0348 Myb_DNA-binding 7.8e-11 CL0123