Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0343 ATGCCGGTACTGCGTAGTGGTGTGCGCAGGGGCCGGGCAGCAGCGAAGAAACAGCAACAGCAGCAGCAATCTAATCCGTTGATCGAAGAAGGGGGGGCCATTGCAACGAGGACAAGAAGGAGGCGGGCAGCGGCGGCGGCAGCGGCAGTGCCGAAGACTAACAAACAACAACAGCAGGTGCTGATCAATGAAAACGTAGCTGTCCCGGCGAAGGAGGTAGAGAATAAGGGGTTGGACGAAGCTTTTCGTGTTGGTGGAGCGGAGAGGGAAGAGGTTGAGGAGAAGCAAATGGATGATTTCCATACTGGAGCTCGGAGCAATGATAAGGGCAATGCTGGTGAAGATGAGGGGAGCACCGCTCCGCTTCCTGAGAAGATTCAAGTAGGTGGCTCCCCAATGTATAAAATAGATAGAAAACTGGGCAAGGGTGGATTTGGGCAAGTATATGTTGGTCAACGTGTTTCTAGTGTAAATATGAATGAGAGGACTGGACCTGGAGCTGTGGAGGTAGCATTAAAATTTGAGCATCGAAGTAGTAAAGGATGTAATTATGGACCGCCATATGAGTGGCAAGTCTACAATACTCTTGGTGGCAGTCATGGTGTTCCACGAGTACACTACAAGGGTAGGCAAGGTGACTACTATGTCATGGTTATGGATATGTTGGGACCTAGCTTGTGGGATGTTTGGAATAATAACTCTCACTCAATGTCCAATGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCCATATTGGAGAAGATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTACTTGGTCCTCCTGGGACACCTGATGAAAAAAAATTGTTCCTTGTTGATCTTGGGTTAGCTACTAGATGGAGGGATAGTACGACAGGTTTGCATGTGGAATATGACCAACGACCTGATGTTTTCAGGGGAACAGTACGCTATGCTAGTGTGCATGCACACTTGGGGAGAACTGGCAGCAGGAGGGATGATCTGGAGTCTCTTGCTTATACATTGGTTTTCCTTCTTCGAGGTCGTCTCCCTTGGCAGGGGTACCAGGGAGAAAACAAAGGGTTCCTTGTTTGCAAGAAGAAGATGGGAACATCTCCAGAGAGCCTCTGTTGCTTCTGCCCCCAGCCTTTTAGACAGTTTGTTGAACATGTAGTGAACTTGAAGTTTGATGAAGATCCTAACTATGCAAAATATATATCTCTATTTGATAGCATTATTGCTCCAAATCCAGATATTAGGCCAATTAATACAGAAGGTGCACAAATGCTCATCGGTCATAAGAGAGGTCGGTTGGCGATGGAAGAAGAAGATGATGAACAGCCAAAAAAGAAGATCCGTATGGGTATGCCAGCAACACAGTGGATTAGTGTTTACAATGCTCGCAGACCGATGAAACAAAGATATCACTACAATGTGGCAGATACAAGGCTATCCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATATATTAGCAGTGTGGCTTCATGTCAGAACCTGTGGGCCTTAATCATGGATGCAGGCACTGGTTTCACTGCCCAAGTTTATGAACTCTCCTCCCATTTTCTCCATAAGGAATGGATAATGGAGCAGTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTTCTAATGGAAGTTCGTTGGTAGTGATGTCTAAGGGCACACAATTTTTGCAGCAATCCTACAAAGTTAGTGATTCATTTCCGTTTAAGTGGATTAACAAAAAATGGAGGGAGGGATTTTATGTTACGGCAATGGCCACTGCAGGTAGCAGATGGGGAGTAGTTATGTCTCGTGGTGCAGGATTTTCTGACCAGGTGGTTGAACTAGATTTTCTTTATCCTAGTGAAGGAATTCACAAGCGGTGGGATTATGGATATCGTATCACAGCAACTGCTGCAACTTGGGATCAAGCTGCATTTGTCCTCAGTGTGCCTAGGAGGAAACCTGTGGATGAAACACAGGAAACACTCAGAACTTCATCTTTTCCTAGTGTACATGTCAAGGAGAAGTGGGCAAAGAATCTATATATTGCATCTGTTTGCTATGGACGTACAGTTTCTTGA 2097 0.4545 MPVLRSGVRRGRAAAKKQQQQQQSNPLIEEGGAIATRTRRRRAAAAAAAVPKTNKQQQQVLINENVAVPAKEVENKGLDEAFRVGGAEREEVEEKQMDDFHTGARSNDKGNAGEDEGSTAPLPEKIQVGGSPMYKIDRKLGKGGFGQVYVGQRVSSVNMNERTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNTLGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHSMSNEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDSTTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMGTSPESLCCFCPQPFRQFVEHVVNLKFDEDPNYAKYISLFDSIIAPNPDIRPINTEGAQMLIGHKRGRLAMEEEDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADTRLSQHIEKGNEDGLYISSVASCQNLWALIMDAGTGFTAQVYELSSHFLHKEWIMEQWEKNYYISAIAGASNGSSLVVMSKGTQFLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDYGYRITATAATWDQAAFVLSVPRRKPVDETQETLRTSSFPSVHVKEKWAKNLYIASVCYGRTVS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0343 698 FunFam casein kinase 1-like protein HD16 107 454 - -
Glsi07g0343 698 CDD STKc_CK1 133 410 - -
Glsi07g0343 698 MobiDBLite consensus disorder prediction 84 112 - -
Glsi07g0343 698 ProSiteProfiles Protein kinase domain profile. 134 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0343 698 PANTHER CASEIN KINASE-RELATED 128 661 - -
Glsi07g0343 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Glsi07g0343 698 Gene3D Transferase(Phosphotransferase) domain 1 101 457 - -
Glsi07g0343 698 ProSitePatterns Protein kinases ATP-binding region signature. 140 173 IPR017441 GO:0005524
Glsi07g0343 698 MobiDBLite consensus disorder prediction 1 56 - -
Glsi07g0343 698 MobiDBLite consensus disorder prediction 15 29 - -
Glsi07g0343 698 SUPERFAMILY Protein kinase-like (PK-like) 134 417 IPR011009 -
Glsi07g0343 698 MobiDBLite consensus disorder prediction 84 128 - -
Glsi07g0343 698 SMART serkin_6 134 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0343 698 Pfam Protein kinase domain 134 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0343 Glsi-ChrGlsi07 2293615 2299510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0343 101 292 EF-hand Containing Proteins AT2G17890 26.214 1.33e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Glsi07g0343 Pkinase 3.9e-16 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0343 07 2293615 2299510 Glsi07g0343 07 2293615 2299510 ECH