Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0340 ATGGCAATGTCCTGCAAGGATGGTAAATTAGGATTGGACAACGGCAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCACGAATGCCCCAAACCCAGTTCCGTTCGCCGCCAGCAGCTTATCCGCGAGTGCCCAATTCTCTCAAACATTGAGCCGAAACAAATTAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAACGAAAAGAGGCTTCGCGCCTTCAAGCAGTTAATAGGAAGCTGACAGCCATGAACAAGCTTCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAATTGGTGTACGAAAATGGCTATTTTCGTCAACACACCCAAAATACGACACTTGCAACCAAAGACACAAGCTGTGAATCAGCGGTGACGAGTGGTCAACACAGTTTGACAACCCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTCTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCACGAGCCTGTGGCCTAGTGGGTCTAGAACCCACAAGGGTTGTAGAAATCCTCAAGGATCGCCCTTCATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCGCCAACCACATTGGCACCTGCCCGTGACTTCTGGTTGTTGCGCTATACTTCTGTTTTAGAAGACGGAAGCCTTGTGATCTGTGAGAGGTCCCTTAAAAATACTCAAAATGGTCCAAGCATGCCGCCTGTGCAGCATTTTGTGAGATCAGAGATGCTTCCTAGTGGTTATTTGATCAGACCTTGTGAAGGGGGTGGTTCTATCATCCACATTGTTGATCACATGGATTTGGAGCCATGGAGTGTGCCTGAAGTACTGCGTCCACTGTATGAATCATCAACAGTGATGGCTCAGAAGACAACCATGGCGGCCTTACGTCAGCTAAGGCAGATATCTCATGAGGTTTCTCAGTCTAATGCCCCTGGGTGGGGCAGAAGACCTGCAGCACTACGAGCACTTAGCCAAAGACTGAGCAGAGGTTTCAATGAGGCACTAAATGGGTTTACTGATGAAGGATGGACAATGATTGGCCATGATGGCGTAGATGATGTTTCAATCCTAGTGAATTCATCCCCTGATAAGTTAATGGGCTTAAATCTCTCCTTTTCCAATGGATTTCCATCTGTCAGTAATGCAGTTTTATGTGCCAAAGCATCAATGCTGTTACAGAATGTGCCTCCAGCCATTCTCTTGAGGTTTCTGCGGGAGCATAGATCAGAATGGGCCGACAACAACATGGATGCTTTCTCAGCTGCTGCTATTAAAGTTGGCCCTTGTAGCTTGCCGGGATCTCGTATTGGAAATTATGGGGGTCAAGTTATACTTCCTCTAGCCCACACTATTGAGCATGAAGAATTTCTGGAAGTCATCAAATTGGAAGGAATTGCTCATTCTCCTGAAGACACAATAGTGCCAAGAGAAATGTTTCTTCTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGTACCTGTGCCGAACTTATATTTGCTCCAATTGATGCGTCTTTTGCTGATGATGCCCCCCTGTTACCTTCTGGATTTCGGATCATTCCACTTGATTCTGGGAAGGAAGCCTCCAGCCCAAATCGTACCCTTGACCTTGCATCTGCTCTTGATATTGGCTCCACAGGAAATAAGGCATCTAATGATCATGCTGGAAATTCTGGCTGTATGAGATCTGTTATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGCATGTAGCATCCATGGCACGGCAATATGTTCGCAGCATCATATCATCTGTCCAAAGGGTGGCATTAGCTCTTTCTCCATCTCATTTGAGTTCGCATGCTGGGCTTAGGCCACCACTGGGTACTCCTGAAGCCCAAACACTAGCTCGTTGGATCTGCAACAGTTATAGGTGCTATTTGGGTGTTGAGCTATTAAAATCTAGTGATGAGGGGAATGAATCCATCCTCAAGTCCTTGTGGCATCACTCGGATGCACTTTTGTGCTGCACTGTAAAGGCATTGCCAGTGTTCACTTTCGCCAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCATTACAAGACATAAGTTTGGAGAAAATATTTGATGAACATGGAAGAAAGATCCTATGTTCAGAGTTTGCCCAGATAATTCAACAGGGTTTTGCCTGCCTTCAAGGTGGTATCTGTCTCTCAAGCATGGGGCGACCAGTCTCATACGAGAGACTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCACTGCATCTGCTTTATGTTTATGAACTGGTCTTTTGTTTAA 2514 0.4634 MAMSCKDGKLGLDNGKYVRYTPEQVEALERLYHECPKPSSVRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLATKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVVEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRSEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVMAQKTTMAALRQLRQISHEVSQSNAPGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMIGHDGVDDVSILVNSSPDKLMGLNLSFSNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAFSAAAIKVGPCSLPGSRIGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIVPREMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALDIGSTGNKASNDHAGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRPPLGTPEAQTLARWICNSYRCYLGVELLKSSDEGNESILKSLWHHSDALLCCTVKALPVFTFANQAGLDMLETTLVALQDISLEKIFDEHGRKILCSEFAQIIQQGFACLQGGICLSSMGRPVSYERLVAWKVLNEEENAHCICFMFMNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0340 837 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Glsi07g0340 837 CDD bZIP 68 107 - -
Glsi07g0340 837 MobiDBLite consensus disorder prediction 131 153 - -
Glsi07g0340 837 Gene3D - 12 82 - -
Glsi07g0340 837 Pfam START domain 160 368 IPR002913 GO:0008289
Glsi07g0340 837 Coils Coil 71 112 - -
Glsi07g0340 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700
Glsi07g0340 837 Pfam MEKHLA domain 694 836 IPR013978 -
Glsi07g0340 837 SUPERFAMILY Homeodomain-like 14 79 IPR009057 -
Glsi07g0340 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Glsi07g0340 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Glsi07g0340 837 CDD START_ArGLABRA2_like 154 369 - -
Glsi07g0340 837 MobiDBLite consensus disorder prediction 131 149 - -
Glsi07g0340 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Glsi07g0340 837 SUPERFAMILY Bet v1-like 159 367 - -
Glsi07g0340 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Glsi07g0340 837 SMART START_1 159 369 IPR002913 GO:0008289
Glsi07g0340 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Glsi07g0340 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Glsi07g0340 837 Gene3D - 194 376 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0340 Glsi-ChrGlsi07 2272824 2279984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0340 1 789 Homeobox Transcription Factor Family AT1G52150 86.237 0.0 1424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi07g0340 START 4e-54 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0302 06 2053921 2060646 Glsi07g0340 07 2272824 2279984 CCT
Glsi07g0340 07 2272824 2279984 Glsi07g0340 07 2272824 2279984 ECH