Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0339 ATGGAAGTGCCGGAATACTTCGTCGGTGGCTATTTTGCAGCCGGAGCGGACCATTTCTCGCCGGAGAAGCGGCACGCCGACCAGAAGCCCGGAGAGCCATTCGCCATTGACGACCTCCTTGACTTCTCTAACGCAGAAGCCATCGCGTCCGACGGATTTTTCGATAATGTCGCCGGAAACTCCACCGACTCTTCAACTGGCACTGCCCTTGACAGCTGCAACTCCTCAATTTCCGGCGTTGAAAACCGTTTCTCTGGCAGCATTGGCACTCGCCCCTTTGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTATGACGATATGGCGGAACTGGAATGGCTGTCGAACTTCGTGGAAGACTCATTTTCAGCCCAAGATGAGCTAAAAACACTCCACTTTCTCTCCGGCGCCTCCGCTTCCGCATTTGGCACGAAGCCCCAGACTCCAGAGTCTTCATCCTCCTACGAAACTCTCCCACCGTTCGCAGCTGATGCCCCTCGAAACGCTCCGTTTTTCCGTCCGGAAACTCCGCTCCCGGGCAAAGCTAGGAGCAAGCGTTCACGCGCCGCTCCTGGAGATTGGTCCACGCGCCTCCTTAACCTCGTAACACCAACATCCACGCTGCCGACTGCTGAACCGAAAACATTAGAAGGTAAGGCGGCGCCGGCGAAGAAGAGGGAGGGTTCTAATTCGGACTCTTCGGGACGGAAATGCCTGCACTGCGCTGCCGAGAAGACCCCGCAATGGCGGACTGGGCCAATGGGTCCAAAGACGCTCTGCAATGCTTGCGGAGTCCGGTACAAGTCCGGGAGGCTGGTGCCAGAGTACCGGCCGGCAGCTAGCCCGACGTTTGTGTCGGCAAAGCACTCGAATTCTCATAGGAAGGTTTTGGAGTTGAGGAGGCAGAAAGAGCTGCAGAGGCAGCATCACCACCAGCATTTGCTCAGTCAAACTTCAATTTTCGGCGTATCCAACGGTGGGGATGAGTACCTGATCCATTCCCGGAATGGGCCAGATTATAGGCATATGATCTAG 1038 0.5617 MEVPEYFVGGYFAAGADHFSPEKRHADQKPGEPFAIDDLLDFSNAEAIASDGFFDNVAGNSTDSSTGTALDSCNSSISGVENRFSGSIGTRPFGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAQDELKTLHFLSGASASAFGTKPQTPESSSSYETLPPFAADAPRNAPFFRPETPLPGKARSKRSRAAPGDWSTRLLNLVTPTSTLPTAEPKTLEGKAAPAKKREGSNSDSSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKELQRQHHHQHLLSQTSIFGVSNGGDEYLIHSRNGPDYRHMI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0339 345 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Glsi07g0339 345 Coils Coil 344 345 - -
Glsi07g0339 345 MobiDBLite consensus disorder prediction 219 234 - -
Glsi07g0339 345 FunFam GATA transcription factor 229 314 - -
Glsi07g0339 345 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Glsi07g0339 345 PIRSF Txn_fac_GATA_plant 17 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Glsi07g0339 345 MobiDBLite consensus disorder prediction 166 237 - -
Glsi07g0339 345 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Glsi07g0339 345 PANTHER GATA TRANSCRIPTION FACTOR 24 310 - -
Glsi07g0339 345 Gene3D - 233 283 IPR013088 GO:0006355|GO:0008270
Glsi07g0339 345 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Glsi07g0339 345 MobiDBLite consensus disorder prediction 199 213 - -
Glsi07g0339 345 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Glsi07g0339 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0339 Glsi-ChrGlsi07 2264678 2266014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0339 32 345 C2C2-Gata Transcription Factor Family AT4G32890 46.057 3.22e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi07g0339 GATA 2e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0339 07 2264678 2266014 Glsi07g0339 07 2264678 2266014 ECH