Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0334 ATGACAGAACAAAGTTGTTCTGAAACTACTAGTACCAGCAACTCCCCTCCTACGTCTTCACCGTCCTCACCCTCCTCCTCTTCTGGGTTATCACATTCTCTCCCAAACCCTGTCTCAAACTCCTCCAAACCTCAGAAAACTGAGACCCAAAAACAGAGCAGACCCAAAAGACCCAGCGACTCTAGCAAGCACCCTTCTTACCATGGGGTTCGAATGCGCAATTGGGGCAAATGGGTGTCAGAAATTCGGGAGCCGCGCAAGAAATCCCGTATCTGGCTCGGTACTTTTGCTACACCAGAAATGGCAGCACGAGCCCACGATGTTGCCGCTTTGAGCATTAAAGGTCAATCAGCCATTCTGAACTTTCCACATATATCAGACAAGCTACCCAGACCAGTCACGTTAAACCCACGTGACATCCAAGCTGCTGCTGCAGAAGCAGCCGCCATGGTAAAATTCGACCCAGTACAATCACCTTCATCGTCCCCAGAAGAGCCAGAGTCTTCAGAGCTGAGTGAGATAGTTGAATTACCAAACATTGAAGAAAGCTTCGAGTCGATGGAGTCAAGAACAGAGTTCATATTGACGGAGTCAGTGGACAGTTGGGTGTATCCGCCAATGGGGTTAGAGGAAGTTGAATTCTGCATTAATTTTTCAGAGCAGTTGTTCGCAGAAGAGAGTTTTATTACAGAGAACTATGAGATCCCAATTTGGGATTAA 720 0.4736 MTEQSCSETTSTSNSPPTSSPSSPSSSSGLSHSLPNPVSNSSKPQKTETQKQSRPKRPSDSSKHPSYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGQSAILNFPHISDKLPRPVTLNPRDIQAAAAEAAAMVKFDPVQSPSSSPEEPESSELSEIVELPNIEESFESMESRTEFILTESVDSWVYPPMGLEEVEFCINFSEQLFAEESFITENYEIPIWD 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0334 239 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Glsi07g0334 239 MobiDBLite consensus disorder prediction 1 69 - -
Glsi07g0334 239 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Glsi07g0334 239 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Glsi07g0334 239 MobiDBLite consensus disorder prediction 154 173 - -
Glsi07g0334 239 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Glsi07g0334 239 MobiDBLite consensus disorder prediction 49 67 - -
Glsi07g0334 239 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Glsi07g0334 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 43 187 - -
Glsi07g0334 239 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Glsi07g0334 239 MobiDBLite consensus disorder prediction 1 48 - -
Glsi07g0334 239 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Glsi07g0334 239 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Glsi07g0334 239 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0334 Glsi-ChrGlsi07 2228065 2228784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0334 34 206 AP2-EREBP Transcription Factor Family AT5G11590 52.332 5.81e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi07g0334 AP2 3.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0334 07 2228065 2228784 Glsi07g0334 07 2228065 2228784 ECH