Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0318 ATGCATCGGATAACTCCTCGTCGTCTTGTACAAGAACGTACGCACAGCTGTTGGCCTCAGAGAGCTTTCTCCTTATGGGTGAGAAGAAGTCTGTGGATTGCGAGGCTTGGAAAAAGTTTATATCATTTCGCCATGCGGGGACGCCTTGTTGATCCGTACAAGCGAGTGGCATCTAGGGAACACATAATTACAAATGGCAAAGAAGAAAATTCAGTCCGTTTACTCAGTGGCAAACCTTCCTGGCAGCGCTCCTTGCGGCATGTACTAGTGGCTTCAGTTTCTTCATTTTTATATGGCTACCATCTTGGAGTAGTCAATGAAACCTTAGAGAGCATTTCCATAGACCTTGACTTTAGGGGGAATACCATGGCTGAAGGTCTGGTAGTAAGTACATGTTTAGGAGGTGCTTTTGTTGGATGTCTGTTCAGTGGGTGGATCGCAGATGGGGTTGGGCGTAGAAGGGCTCTCCAGTTGTGTGCTTTGCCTATGATCATTGGGGCATCAATGAGTGCAACAACAAAAGGCCTGTGGGGTATGCTTTTGGGAAGGTTATTTGTTGGCACTGGAATTGGACTTGGCCCACCTGTCGCAGCTCTTTATGTGGCTGAGGTCTCACCTGCAGCTGTAAGGGGTGCTTTTGGCAGCTTAACTCAAATCACAACATGTTTTGGACTTATGGGCGCCCTCTTTATTGGACTCCCGGCTAAGGAAATAGTGGGTTGGTGGCGGATTTGTTTCTGGGTATCTGCCATTCCTGCTGCAATTCTTGCCTTTTTGATGGAGTTCTGTGCAGAGAGTCCTCATTGGCTTTATAAGAAAGGAAGAGGCAATGAGGCTGAAGCTGAATTTGAGAAGCTCTTGGGAGGGATACACGCGAAACCTGCCATGAATGAACTGTCAACGTCTGACAGAGGTGACGAGACTGATATAGTGAAACTCTCAGAATTACTCTATGGCCACCATTTCAAAGTGATGTTCATTGGATCTGCACTTTTTGCTTTGCAGCAGCTTTCTGGCATAAACGCTGTTTTTTATTTCTCTTCAACTGTGTTTAACAGCTTTCGTGTACCATCAGATCTTGCAAACACATGTATAGGAATTTGCAATTTATTGGGGTCAGTTCTTGCAATGATTCTGATGGATAAACTTGGAAGGAAAGTGCTTCTCCTCTGGAGCTTTATGGGCATGGCGGTGTCAATGGGACTCCAAGTTATTGCTGCAAGTTCTTTGGCATCAGGATCTGGAGCAAAGTATCTATCTGTTGGTGGCATGTTGCTGTTTGTCTTAACATTTTCATTTGGTGCTGGTCCAGTACCTAGTCTCCTCCTGTCAGAAATTCTACCTGGAAGGATCAGGGCAAATGCATTGGCAATATGCATATCTGTGCATTGGGTGATAAACTTCTTCGTTGGCCTATTATTTTTGCGCTTGCTGGAGCAAATGGGGGCACAACTCCTGTATACTATTTTTGGTTCGTTCTGTCTATTGGCGGTGTTTTTTGTGAAGAAAAATGTCGTGGAAACAAAAGGGAAGTCACTCCAAGAAATTGAGCTTGCACTTCTTCCACAAGAAGCAACGAAATCTGCTACCTCATGCATCTGTCATCTTGAAGCTTTTCACATAATGTTCACCATGCTAAAGTTGGAGTCTGGGAAGCAATGCTATTAA 1668 0.4484 MHRITPRRLVQERTHSCWPQRAFSLWVRRSLWIARLGKSLYHFAMRGRLVDPYKRVASREHIITNGKEENSVRLLSGKPSWQRSLRHVLVASVSSFLYGYHLGVVNETLESISIDLDFRGNTMAEGLVVSTCLGGAFVGCLFSGWIADGVGRRRALQLCALPMIIGASMSATTKGLWGMLLGRLFVGTGIGLGPPVAALYVAEVSPAAVRGAFGSLTQITTCFGLMGALFIGLPAKEIVGWWRICFWVSAIPAAILAFLMEFCAESPHWLYKKGRGNEAEAEFEKLLGGIHAKPAMNELSTSDRGDETDIVKLSELLYGHHFKVMFIGSALFALQQLSGINAVFYFSSTVFNSFRVPSDLANTCIGICNLLGSVLAMILMDKLGRKVLLLWSFMGMAVSMGLQVIAASSLASGSGAKYLSVGGMLLFVLTFSFGAGPVPSLLLSEILPGRIRANALAICISVHWVINFFVGLLFLRLLEQMGAQLLYTIFGSFCLLAVFFVKKNVVETKGKSLQEIELALLPQEATKSATSCICHLEAFHIMFTMLKLESGKQCY 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0318 555 PRINTS Sugar transporter signature 335 345 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi07g0318 555 PRINTS Sugar transporter signature 421 442 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi07g0318 555 PRINTS Sugar transporter signature 180 199 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi07g0318 555 PRINTS Sugar transporter signature 95 105 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi07g0318 555 PRINTS Sugar transporter signature 444 456 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi07g0318 555 ProSitePatterns Sugar transport proteins signature 1. 376 392 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi07g0318 555 Gene3D MFS general substrate transporter like domains 81 520 IPR036259 -
Glsi07g0318 555 Pfam Sugar (and other) transporter 88 517 IPR005828 GO:0016020|GO:0022857|GO:0055085
Glsi07g0318 555 NCBIfam sugar porter family MFS transporter 86 516 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi07g0318 555 SUPERFAMILY MFS general substrate transporter 78 517 IPR036259 -
Glsi07g0318 555 FunFam facilitated trehalose transporter Tret1 80 521 - -
Glsi07g0318 555 ProSiteProfiles Major facilitator superfamily (MFS) profile. 87 509 IPR020846 GO:0022857
Glsi07g0318 555 CDD MFS_GLUT_like 90 507 - -
Glsi07g0318 555 PANTHER SOLUTE CARRIER FAMILY 2 78 537 IPR045263 -
Glsi07g0318 555 ProSitePatterns Sugar transport proteins signature 1. 143 160 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0318 Glsi-ChrGlsi07 2104197 2112042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0318 53 465 Organic Solute Cotransporters AT1G67300 65.721 0.0 541