Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0315 ATGGGCGTGGACATGTCGAATAACCCACCTCACACTTCTCACACCAAGGACTTCTTTGCCTCTCCAGCTCTCTCTCTTAGCCTTGCTGGAATTTTTCGGCATGCCGGGGAGGCAGCTGCGGCAGCGACGTCCAGCAAGGAGGTGGAGGAGGGGGATGAAGGGAGCGGAGGAGGAGGAGGAGTTGGGCGCCGAGAAGATACGGTTGAGATTAGTAGCGAGAACTCGGGGCACACGAGATCCAGATCAGACGATGATTTTGAAGAAGGGGAGCATGAGGATGATGACGGTGATGGGGACAAGAACAAGAAGAAGAAGAGGAAGAAATATCACAGGCACACTGCTGAGCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAAAGGCAACAACTTAGCAAGCAATTAGGCCTTGCTCCTAGGCAAGTCAAGTTCTGGTTCCAGAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCGTTGTTGAAGACGGAAATTGAGAAACTAAGAGAGGAAAATAAAGCCATAAGAGAGATCGTAAACAAAGCTTGTTGCCCCAACTGTGGAATGGCCACCACTAGCAGAGAGGCTGCCATGTCCACTGAAGAACAACAAATACGTATCGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGGGCAGCTTTGGGGAAATACCCAGCAGGTACGTCGTCGTCTCCTTCGTGTTCTGCGGGCAATGACGATCAAGAGAACAGAAGCTCTTTGGATTTCTACACTGGAATTTTTGGGCTTGAGAAGTCAAGGATAATGGAGATAGTTAACCAGGCAATGGAAGAACTCATAAAGATGGCTACTGTGGGGGAACCATTATGGGTTCGCAGTGTTGAGACGGGTCGCGAAATACTCAACTATGATGAGTACGTGAAGGAGTTCTCAGTTGATGATTCAAATACTGCAAGGCCAAAGAGATCCATTGAAGCCTCAAGAGAAACTGGGGTTGTTTTCGTTGATCTCCCACGTCTTGTCCAACGATTTTTAGATGTGAATCAATGGAAGGAAATGTTTCCATGTTTAATATCAAAGGCAGCAACAGTTGATGTTATATGCAGTGGCGAAGGAGCTAACAGGGATGGTGCGGTGCAACTGATGTTTGCTGAGCTGCAAATTCTAACACCAATGGTGCCCACCAGAGAAGTGTATTTTGTCCGTTTCTGCAAACAATTGAACTCAGAGCAGTGGGCAATCGTTGATGTTTCTGTAGACAAAGTAGAAGACAACATCGATGCCTCCCTCGTGAAATGCAGAAAACGCCCATCTGGTTGCATTATTGAGGATAAGTCAAATGGCCATTGCAAGGTAATCTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAGTTCACACAATGTATCGCACCATTGTGAACAGTGGTCTAGCCTTTGGGGCAAAACACTGGGTTGCTACACTGCAACTTCAATGCGAACGTCTAGTGTTCTTTATGGCAACAAATGTTCCAATGAAGGATTCAACCGGTGTTGCGACGTTGGCTGGGAGGAAAAGTATTTTGAAGTTGGCACAAAGGATGACATGGGGTTTCTGCCATGCTGTTGGGGCGTCAAGCTTCCATACATGGACTAAGGTAACAAGCAAAACAGGGGAAGACATAAGGATAAGTTCTAGGAAGAACTTGAACGATCCTGGGGAACCTCTTGGGGTGATCTTGTGCGCTGTTTCTTCGGTATGGTTGCCTGTTTCTCCTAACGTTATATTTGATTTCTTGAGGGATGAAGCCCGCAGAAGTGAGTGGGATATCATGTCCAGTGGTGGGTCAGTGCAATCCATCGCCAACTTAGCCAAAGGACAAGACCGGGGCAATTCGGTAACCATCCAAACAATTAAATCGAAAGAAAACAGCATGTGGGTACTACAGGATAGCTGCACAAATGCTTACGAATCAACGGTGGTGTATGCTCCTGTGGACATTACTGGTATTCAGTCTGTGATGACTGGGTGTGATTCAAGCAATCTAGCTATACTACCCTCGGGTTTCTCTATTCTCCCTGATGGACTCGAAGCAAGGCCATTGGTGATTAGTTCGAGGCAGGAAGAGAGAAACACAGAAGGAGGGTCTCTCTTCACAATGGGATTCCAGGTGTTAACTAATAATTCTCCAACAGCTAAGCTGACAATGGAGTCAGTGGAATCAGTGAACACTCTTATATCTTGTACATTAAGGAATATCAGAACGAGTTTACAGTGTGAGGATGGTTAA 2286 0.4646 MGVDMSNNPPHTSHTKDFFASPALSLSLAGIFRHAGEAAAAATSSKEVEEGDEGSGGGGGVGRREDTVEISSENSGHTRSRSDDDFEEGEHEDDDGDGDKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLREENKAIREIVNKACCPNCGMATTSREAAMSTEEQQIRIENAKLKAEVEKLRAALGKYPAGTSSSPSCSAGNDDQENRSSLDFYTGIFGLEKSRIMEIVNQAMEELIKMATVGEPLWVRSVETGREILNYDEYVKEFSVDDSNTARPKRSIEASRETGVVFVDLPRLVQRFLDVNQWKEMFPCLISKAATVDVICSGEGANRDGAVQLMFAELQILTPMVPTREVYFVRFCKQLNSEQWAIVDVSVDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTVHTMYRTIVNSGLAFGAKHWVATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWGFCHAVGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGVILCAVSSVWLPVSPNVIFDFLRDEARRSEWDIMSSGGSVQSIANLAKGQDRGNSVTIQTIKSKENSMWVLQDSCTNAYESTVVYAPVDITGIQSVMTGCDSSNLAILPSGFSILPDGLEARPLVISSRQEERNTEGGSLFTMGFQVLTNNSPTAKLTMESVESVNTLISCTLRNIRTSLQCEDG 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0315 761 Pfam START domain 277 500 IPR002913 GO:0008289
Glsi07g0315 761 SUPERFAMILY Bet v1-like 269 500 - -
Glsi07g0315 761 Gene3D - 275 497 IPR023393 -
Glsi07g0315 761 CDD START_ArGLABRA2_like 271 499 - -
Glsi07g0315 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 102 756 IPR042160 -
Glsi07g0315 761 Coils Coil 162 189 - -
Glsi07g0315 761 FunFam Homeobox-leucine zipper protein GLABRA 2 276 499 - -
Glsi07g0315 761 Pfam Homeodomain 106 161 IPR001356 GO:0003677
Glsi07g0315 761 SMART HOX_1 105 167 IPR001356 GO:0003677
Glsi07g0315 761 SUPERFAMILY Homeodomain-like 93 164 IPR009057 -
Glsi07g0315 761 SUPERFAMILY Bet v1-like 532 748 - -
Glsi07g0315 761 CDD homeodomain 110 161 IPR001356 GO:0003677
Glsi07g0315 761 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Glsi07g0315 761 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Glsi07g0315 761 FunFam Homeobox-leucine zipper protein HDG1 90 179 - -
Glsi07g0315 761 Gene3D - 92 175 - -
Glsi07g0315 761 SMART START_1 276 500 IPR002913 GO:0008289
Glsi07g0315 761 MobiDBLite consensus disorder prediction 36 114 - -
Glsi07g0315 761 Coils Coil 213 233 - -
Glsi07g0315 761 ProSiteProfiles START domain profile. 267 503 IPR002913 GO:0008289
Glsi07g0315 761 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0315 Glsi-ChrGlsi07 2063109 2068130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0315 70 760 Homeobox Transcription Factor Family AT1G79840 67.045 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi07g0315 START 2.1e-58 CL0209