Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0256 ATGGATGTTACCTCTGTGGGACCGAATAGCAACACCATAACCGACCAATATCCTTTGTTGATGGAGCAGCCAGAAACCCATAATGGCCATCAGCACATAATTGACATCACAAGAAATAGTAATGCTTTATCTAGCTCATCTCAAGATAATCGACATCCTGAAATGCGTTTGTCGAATAACGAAGATCAACAGTCTGACGGCACACAAGCCCTTACTCGTCAAACATCTTCATCTTCCTTATCCAGATTAAACTCTAGAAATTCCTCATCGACAAGAAGAGGTGAAGGATATGTTCATCGCAGAAGGAGCCCACTGAATTCTGGACTATGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATTGTTGTCTTGTCATTATCTAGGAATGAAAATCCCCAGGCCCCATTATTTGCATGGGTTGTGGGTTATGCATCTGGTTGTGTTGCTACACTTCCTATTCTTTACTGTCGATATCGAAGCCGCGATCAAAGTACTGGACAAGATTTATCTCAACCATCTCAAGGATCTTCTGGAAGCAATCCTTCAGAACCAACTTCTTATACTGCCATCTCTGTTGCTCATGCTTCAGACGAAGAGAATAGTCGTGCTACAGAATCAGCTACAAGAAACACTAGGATACCTGGAGTCTTCAGCTCTAGGTTTAATGGAGCAGTAGACCATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGAAACGTTTGGATATTTGGAGGTCACTCTTCTCCTTCTGATGCTCCAAAATTATATAGGTTATGTATAGTGTTTCTTACCTTCAGCTGCATTGGATATGCTATGCCATTCATACTATGCGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGAATTCGGGAGGACTTTTCTCAAACTAGAGGAGCAACAGTAGAATCTATTAATGCTCTGCCAATATACAAGTTCAGATTGAAGAAAAATGAAAATAGTGATGATCAAGATGTTGATACAGATATAGATGAAGGTGGGACCTTGGCTGCTGGGACAGAAAAGGAGCGGGCCATATCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGCTACCCTGTTTTCATGTCTTTCATGTAGAGTGTGTTGACAAATGGTTAAAAATAAATGCATCTTGTCCTCTTTGTAAAAGTGAGGTTGGTACAAGTGGAGTGCCACCTTCAGCGGGGGACACCAGTCGGCATTAG 1278 0.4171 MDVTSVGPNSNTITDQYPLLMEQPETHNGHQHIIDITRNSNALSSSSQDNRHPEMRLSNNEDQQSDGTQALTRQTSSSSLSRLNSRNSSSTRRGEGYVHRRRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYASGCVATLPILYCRYRSRDQSTGQDLSQPSQGSSGSNPSEPTSYTAISVAHASDEENSRATESATRNTRIPGVFSSRFNGAVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFRLKKNENSDDQDVDTDIDEGGTLAAGTEKERAISGEDAVCCICLAKYADDDELRELPCFHVFHVECVDKWLKINASCPLCKSEVGTSGVPPSAGDTSRH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0256 425 Pfam Ring finger domain 366 407 IPR001841 -
Glsi07g0256 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 410 - -
Glsi07g0256 425 MobiDBLite consensus disorder prediction 170 190 - -
Glsi07g0256 425 FunFam E3 ubiquitin-protein ligase 349 415 - -
Glsi07g0256 425 SUPERFAMILY RING/U-box 359 412 - -
Glsi07g0256 425 SMART ringv_2 365 407 IPR011016 GO:0008270
Glsi07g0256 425 ProSiteProfiles Zinc finger RING-type profile. 366 407 IPR001841 -
Glsi07g0256 425 MobiDBLite consensus disorder prediction 60 92 - -
Glsi07g0256 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 413 IPR013083 -
Glsi07g0256 425 SMART ring_2 366 406 IPR001841 -
Glsi07g0256 425 MobiDBLite consensus disorder prediction 42 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0256 Glsi-ChrGlsi07 1678616 1681695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0256 1 413 C3H Transcription Factor Family AT1G80400 59.322 2.22e-174 492