Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0254 ATGCTCACATTGTTTTCTCAGGTCATAAAGAAAGAAAAAAAGCACACGCCCCCAACTTTGAACGTTGAAACGATGTCGCCGAAGAGTGGCACCCACTCGGCCGAATCCGACGTCGTCGAGTTGAATCTTAACGAGACTGAGCTCACCCTGGGTCTTCCCGGTACCAAATCTGCCTCCAAACGTGGCTTATCAGAAAGTTCATCCTCAATTAATTTCCCGGAACCAAAGGCACAAATGGTGGGGTGGCCGCCGGTGAGGGCGAGCAGGAAGAACATGACGATGAAGAAGTGCAAGTACGTGAAGGTGGCGGTAGACGGAGCTCCATATCTTAGGAAGGTGGATCTTGAAACCTATGAGAGCTATGATCAGCTGCTGAGGGCTTTAGAGACCATGTTTTGTTGCTCGACAATCCGTAATGATTTGAATGAGAGGAAACTCATGGACACTGGAAATGGGGGTGAATACGTGCCCACCTTTGAGGACAAAGATGGTGACTGGATGTTAGTTGGGGATGTGCCCTGGAAGATGTTTGTCGAATCATGCAAAAGAATCAGGTTGATGATAAGATCTGAGTCAGAGGCCACTGGCTTAGATTCTAGGAGAGATCCAAAGTGCAGGAGCTGA 624 0.4856 MLTLFSQVIKKEKKHTPPTLNVETMSPKSGTHSAESDVVELNLNETELTLGLPGTKSASKRGLSESSSSINFPEPKAQMVGWPPVRASRKNMTMKKCKYVKVAVDGAPYLRKVDLETYESYDQLLRALETMFCCSTIRNDLNERKLMDTGNGGEYVPTFEDKDGDWMLVGDVPWKMFVESCKRIRLMIRSESEATGLDSRRDPKCRS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0254 207 Gene3D - 91 200 - -
Glsi07g0254 207 FunFam Auxin-responsive protein 92 201 - -
Glsi07g0254 207 MobiDBLite consensus disorder prediction 50 74 - -
Glsi07g0254 207 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 192 IPR003311 GO:0005634|GO:0006355
Glsi07g0254 207 MobiDBLite consensus disorder prediction 19 35 - -
Glsi07g0254 207 ProSiteProfiles PB1 domain profile. 97 191 IPR000270 GO:0005515
Glsi07g0254 207 Pfam AUX/IAA family 66 197 IPR033389 -
Glsi07g0254 207 SUPERFAMILY CAD & PB1 domains 88 188 - -
Glsi07g0254 207 MobiDBLite consensus disorder prediction 1 35 - -
Glsi07g0254 207 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0254 Glsi-ChrGlsi07 1663255 1664273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0254 19 191 B3 DNA Binding Superfamily AT4G23980 28.877 2.17e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi07g0254 AUX_IAA 3.7e-48 CL0072