Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0250 ATGAGTGGCACTTCGTTGGTGGGCTTGCAAGACCACCTCAAATTGGCAAGGGAGTACGCTCTTGAAGGGCTTTATGATACCTCTATCATCTTCTTCGACGGTGCAATAGCCCAGATCAACAAGCACCTAAACACTGTTGATGACCCATTAATTCGATCAAAATGGATGAATGTTAAGAAAGCCCTTTCTGAGGAAACAGAAGTTGTAAAGCAACTAGATGCCGAGAGAAGGGCATTTAAAGAAACCCCCAGTGGTAGACGTCCTGCTTCACCCCCTATATCTACTAAATCATCATTTGTTTTTCAACCATTGGATGAGTATCCTACTTCATCAAGTGCGCCCACAGATGATCCTGATGTATGGAGGCCACCTAGTCAAGATACTACAGGTAGAAGACCCTCAAGGTCTGGTCAAGTGGGCACCAGGAAGTCACCACAAGATAGGACTTGGGCTCGAGGTTCCACAAGAACAGGTACAACTGGCCGTGGTGCAAAGGCTGGTGGTACAAGTAGGATTAACTCAGGAGCCCGGGCATCAACTACCGGTAAGAAAGGCACTGGTTCCAGTGGCGGAAAGTCGAGCAAGGGCGATTCAGTTAATGGTGATGTTGAAGATAGTAAGTTAAAGAAAGGACAATATGAGGGTCCTGATCCTGACTTGGCTGCAATGCTTGAAAGGGATGTATTAGAATCCTCTCCTGGAGTGAGATGGGATGATGTTGCAGGGCTAACTGAAGCCAAAAGACTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTTCTAATGTTTGGTCCTCCAGGAACTGGGAAGACACTGCTAGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTCAATGTTTCTTCTGCTACATTAGCTTCAAAATGGCGTGGAGAGAGTGAGCGTATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATTTTCATTGATGAGATTGACTCTCTGTGTAATGCTAGGGGGGCATCTGGGGAGCATGAATCTTCAAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTTCCACAAATGAAGATGGTAGCAGAAAAATAGTGATGGTTTTGGCAGCCACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGACTTGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTAATCCGGATCAATTTGAAGACTGTAGAGGTGGCCTCCGATGTAAACATAGACGAAGTGGCTCGTCGGACTGAGGGCTATAGTGGGGATGATCTGACAAATGTATGTCGGGATGCTTCTTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGGGATGAGATAAAGAACATGCCCAAGGATGAGATTTCAAAGGATCCCATCGCCATGTGCGATTTCGAAGAAGCTTTGATGAAAGTCCAACGAAGTGTTTCTCAGGCTGATATTGAACGCCATGAGAAGTGGTTTGCTGAATTTGGATCAGCATAA 1569 0.4532 MSGTSLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTVDDPLIRSKWMNVKKALSEETEVVKQLDAERRAFKETPSGRRPASPPISTKSSFVFQPLDEYPTSSSAPTDDPDVWRPPSQDTTGRRPSRSGQVGTRKSPQDRTWARGSTRTGTTGRGAKAGGTSRINSGARASTTGKKGTGSSGGKSSKGDSVNGDVEDSKLKKGQYEGPDPDLAAMLERDVLESSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVASDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPIAMCDFEEALMKVQRSVSQADIERHEKWFAEFGSA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0250 522 PANTHER AAA DOMAIN-CONTAINING 25 521 - -
Glsi07g0250 522 MobiDBLite consensus disorder prediction 88 116 - -
Glsi07g0250 522 MobiDBLite consensus disorder prediction 77 218 - -
Glsi07g0250 522 Gene3D - 412 498 - -
Glsi07g0250 522 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Glsi07g0250 522 FunFam Katanin p60 ATPase-containing subunit A1 412 498 - -
Glsi07g0250 522 MobiDBLite consensus disorder prediction 127 196 - -
Glsi07g0250 522 Gene3D - 3 80 - -
Glsi07g0250 522 MobiDBLite consensus disorder prediction 198 218 - -
Glsi07g0250 522 Gene3D - 232 513 IPR027417 -
Glsi07g0250 522 CDD Kp60-NTD 9 75 - -
Glsi07g0250 522 ProSitePatterns AAA-protein family signature. 383 402 IPR003960 GO:0005524|GO:0016887
Glsi07g0250 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 519 IPR027417 -
Glsi07g0250 522 Pfam AAA+ lid domain 433 474 IPR041569 -
Glsi07g0250 522 Pfam ATPase family associated with various cellular activities (AAA) 274 411 IPR003959 GO:0005524|GO:0016887
Glsi07g0250 522 SMART AAA_5 270 413 IPR003593 GO:0016887
Glsi07g0250 522 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 522 IPR028596 GO:0008017|GO:0008568|GO:0051013
Glsi07g0250 522 FunFam Katanin p60 ATPase-containing subunit A1 232 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0250 Glsi-ChrGlsi07 1638505 1642263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0250 226 514 Calmodulin-binding Proteins AT3G56690 40.678 3.24e-51 186