Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0214 ATGAGTGCTTCTGCTCGCGCGTGCCAATTTTATGTGGATGAGAGATCTCTCATCCAGCCTCAATTTCCCATGAAGCATAAAGAAGTTTTCACTTCCTCTGACATAGAATACCCATCGTTCAAGAAACCAAGAATTTCAGCAACACTCCCATATCCTAGCTTCCAGACGGTACTAAACGAAGCAAGGATCGGCAATGTCAAGACCCAGCTCTGCAGAAAATTCAGAGTAGGACTCTGTACTCTTGGGTCCAGATGTAAATACGCCCACTGCATTGGAGAACTCAGAAGGCAGGACAATTTAACCAAAGAATATCCGTTGGCTGAGACTTTTGGTGGTGACTATAGAGCACTTCATGAACCCCAACTATGCAGAATGTTCCTTCAAAGGAAACAGTGCTCATACGGAAACAGCTGCCGTTTCCTTCATGTCAGGCATGACAGCATAAATTCGAGAGAGAGACCAATGATAGAAATGATTCCTACTGGACCTGTAGGGCATGGCAAAAGTGAATCTGGTCAATTAGAATTCAAGAGGGTTTCCAATGCGAATTTTGATCCCGAAGTGAATCCAAAGAGACTGCTGCTGAAAACAAGGTTGTGCAACAAGTGGGAGATCAAAGGGTATTGCCCATTTGGAAAGATTTGTCGCTTTGCACATGGACAAGCAGTTGAGGTTCAATCCATGTCAGTATTTTGTCCAAAAAAAAAATGGACTCAGATTCCGGTTGTTGCTAATGCAGAATTAGGGAAACTTGATGGCTACTCTAGTTCAGAATACAGGGTATTGCAGACTTCTAAAGCTAATACTACTACAAATGCATCTAACAGTATAACGGCCACGGGGCCTTTGCTTAAGAAGGAACCTTATCCCATAAATTGCCAATTCAGGAGAAAGGAACTACACAAGATCAGTCGCATCTATGGTGATTGGATATAA 936 0.4284 MSASARACQFYVDERSLIQPQFPMKHKEVFTSSDIEYPSFKKPRISATLPYPSFQTVLNEARIGNVKTQLCRKFRVGLCTLGSRCKYAHCIGELRRQDNLTKEYPLAETFGGDYRALHEPQLCRMFLQRKQCSYGNSCRFLHVRHDSINSRERPMIEMIPTGPVGHGKSESGQLEFKRVSNANFDPEVNPKRLLLKTRLCNKWEIKGYCPFGKICRFAHGQAVEVQSMSVFCPKKKWTQIPVVANAELGKLDGYSSSEYRVLQTSKANTTTNASNSITATGPLLKKEPYPINCQFRRKELHKISRIYGDWI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0214 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 121 143 IPR000571 GO:0046872
Glsi07g0214 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 196 221 IPR000571 GO:0046872
Glsi07g0214 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 67 90 IPR000571 GO:0046872
Glsi07g0214 311 SUPERFAMILY CCCH zinc finger 117 146 IPR036855 GO:0046872
Glsi07g0214 311 SMART c3hfinal6 118 144 IPR000571 GO:0046872
Glsi07g0214 311 SMART c3hfinal6 194 221 IPR000571 GO:0046872
Glsi07g0214 311 SMART c3hfinal6 65 91 IPR000571 GO:0046872
Glsi07g0214 311 ProSiteProfiles Zinc finger C3H1-type profile. 65 92 IPR000571 GO:0046872
Glsi07g0214 311 PANTHER CCCH ZINC FINGER/TIS11-RELATED 64 145 IPR045877 GO:0003729
Glsi07g0214 311 SUPERFAMILY CCCH zinc finger 65 95 IPR036855 GO:0046872
Glsi07g0214 311 Gene3D - 189 227 - -
Glsi07g0214 311 Gene3D - 117 147 - -
Glsi07g0214 311 Gene3D - 62 97 - -
Glsi07g0214 311 ProSiteProfiles Zinc finger C3H1-type profile. 194 222 IPR000571 GO:0046872
Glsi07g0214 311 SUPERFAMILY CCCH zinc finger 193 221 IPR036855 GO:0046872
Glsi07g0214 311 ProSiteProfiles Zinc finger C3H1-type profile. 122 145 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0214 Glsi-ChrGlsi07 1373352 1374997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0214 194 220 C3H Transcription Factor Family AT1G68200 59.259 7.51e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi07g0214 zf-CCCH 6.9e-08 CL0537