Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0199 ATGCGCTACATCTCCGCTCCCTGGGCCTCTTTCTGTCCTTCTCCTCCCCGTCCCTGCTTCTCTTCGCAAAACCCAGATCTAGGGATGGGTGATGTAAAGGACACCGAGGCTTACGAGGAAGAGCTGATCGACTACGAAGAAGAAGATGAAAAAGCCCCCGATTCCGTTACGGGCAAAGCCGGTGCTGAATCCGTGAAGAAGGGCTATGTTGGAATCCATAGTTCGGGATTTCGAGACTTCCTGCTGAAACCAGAGCTTCTTCGAGCCATTGTGGATTCAGGATTTGAGCATCCTTCAGAAGTGCAACACGAATGCATCCCCCAGGCTATACTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCAACACTTCAGCAAATTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCACGAATTTGAGAGGTTTAGCACCTATCTTCCTGAAATTAAAGTTGCAGTTTTCTATGGCGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACACCTGGGAGGATATTAGCGCTGGCTAGAGATAAGGATCTTGGTTTAAAGAATGTGAGGCATTTCATACTTGATGAGTGTGACAAGATGCTCGAATCACTTGACATGAGGAAAGATGTGCAAGAAATTTTTAGATTGACACCCCATGATAAGCAAGTGATGATGTTTTCAGCTACACTTAGCAAAGAGATCCGTCCTGTTTGCAAAAAATTTATGCAAGACCCCATGGAAATCTATGTAGATGATGAGGCCAAATTGACCCTTCATGGTCTTGTACAGCATTACATCAAATTGAAGGACAATGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCCCTGGATTTCAACCAAGTGGTTATTTTTGTCAAAAGTGTCAGCCGAGCAGCAGAGTTGAACAAGTTGCTTGTGGAGTGCAACTTCCCATCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGATTGAAACGATACAAGGGTTTCAAGGAAGGGAAGCAGAGAATTCTTGTGGCTACAGATTTAGTGGGAAGGGGGATTGACATTGAACGTGTTAATATTGTTATCAATTATGACATGCCTGATTCTGCTGATACTTACCTGCACAGGGTGGGAAGAGCTGGTAGATTCGGCACCAAGGGGCTTGCAATTACTTTTGTTTCTTCTTCCTCTGACTCAGATGTTCTTAATCAGGTGCAATCAAGGTTTGAGATTGATATTAAGGAGCTACCTGAACAAATTGACACTTCCACTTACATGCCAAACTGA 1371 0.434 MRYISAPWASFCPSPPRPCFSSQNPDLGMGDVKDTEAYEEELIDYEEEDEKAPDSVTGKAGAESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPEIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFRLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKDNEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSSDSDVLNQVQSRFEIDIKELPEQIDTSTYMPN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0199 456 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 75 103 IPR014014 GO:0003724
Glsi07g0199 456 CDD SF2_C_DEAD 292 420 - -
Glsi07g0199 456 Gene3D - 71 287 IPR027417 -
Glsi07g0199 456 FunFam DEAD-box ATP-dependent RNA helicase 288 456 - -
Glsi07g0199 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 429 IPR027417 -
Glsi07g0199 456 SMART ultradead3 94 295 IPR014001 -
Glsi07g0199 456 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 279 IPR014001 -
Glsi07g0199 456 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 74 430 - -
Glsi07g0199 456 CDD DEADc_DDX39 74 281 - -
Glsi07g0199 456 SMART helicmild6 331 412 IPR001650 -
Glsi07g0199 456 Pfam DEAD/DEAH box helicase 100 265 IPR011545 GO:0003676|GO:0005524
Glsi07g0199 456 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 452 IPR001650 -
Glsi07g0199 456 Pfam Helicase conserved C-terminal domain 305 412 IPR001650 -
Glsi07g0199 456 FunFam DEAD-box ATP-dependent RNA helicase 56-like 63 281 - -
Glsi07g0199 456 Gene3D - 288 456 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0199 Glsi-ChrGlsi07 1271488 1279565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0199 29 456 Eukaryotic Initiation Factors Gene Family AT5G11200 82.516 0.0 754