Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0196 ATGGTGCAAACAAAGAAGTTCAGAGGTGTCAGGCAACGTCAGTGGGGCTCATGGGTTTCTGAGATTCGTCATCCATTATTGAAAAGGAGGGTGTGGCTTGGGACGTTTGAAACTGCCGAAGAAGCAGCCAGAGCATACGATGAGGCAGCCATTTTGATGAGTGGTAGAAACGCCAAAACAAACTTCCCTATCGAAAATAACCAGATGGGGAATCACAGTTCGAGTTTTTCTTCCTCTTCCACAACAACATTGTCTGAGGCTCTCAGTGCAAAGCTTCGGAAGAGCTGCAGATCTCCATCGCCATCCCTCACTTGCCTAAGGCTTGACACTGAGAACTCCCACATTGGAGTGTGGCAGAAGCGGGCAGGGCCTCGCTCTGACTCAAGCTGGGTTATGACGGTTGAGTTAGAAAGGAAGAATCTTGAAGCTCCCGAGACCTCGGAATCGCCCGTGACTGATAGCCCAGAGAAGGTAGTAAAAACAGAAGAAGGCAATAGTGGCGACTTGGATGAGGAGCAGAGGATGGCCTTGCAGATGATAGAAGAACTCCTGAATAGGAACTAA 564 0.4911 MVQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPIENNQMGNHSSSFSSSSTTTLSEALSAKLRKSCRSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSSWVMTVELERKNLEAPETSESPVTDSPEKVVKTEEGNSGDLDEEQRMALQMIEELLNRN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0196 187 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Glsi07g0196 187 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Glsi07g0196 187 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Glsi07g0196 187 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Glsi07g0196 187 MobiDBLite consensus disorder prediction 155 173 - -
Glsi07g0196 187 MobiDBLite consensus disorder prediction 139 173 - -
Glsi07g0196 187 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Glsi07g0196 187 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Glsi07g0196 187 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Glsi07g0196 187 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Glsi07g0196 187 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Glsi07g0196 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0196 Glsi-ChrGlsi07 1257094 1257874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0196 1 187 AP2-EREBP Transcription Factor Family AT1G15360 65.829 2.04e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi07g0196 AP2 5.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0196 07 1257094 1257874 Glsi07g0196 07 1257094 1257874 ECH