Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0195 ATGGCGGAACCTCATCTACATGGGACTCTCCACGTCACCATCTTTGAGATAGATAACCTGGGTGCCAACAAAAATAGCAATCTTTTCAGCAAGATCATGGACAGCATTGAGGACACAGTTGGTGTAGGAACGGGATCTTCTAGAATCTATGCAACCATTGATCTGGAGAAGGCGAGAGTGGGAAGGACCAGAGTGATAGATAACGATGGTTCCAGTCTTACGTGGGAAGAGTCTTTTCACATATATTGTGCCCATGTGGCTTCAAATATAATATTCACTGTGAAAGGTGCTAATCGTGTTGGGGCAACTTTAATTGGAAGAGCACATGTTCCCGTTCGGGAGATCATGGATGGTCAGGAGTTTGATGATTGGGTTAAAATCTTGGATGAGGACCAAAAACCACTCGAAGGTGATTCAAAGATCCATGTCAAGCTCCAATATTTTGATGTCAAAAAAGACCGCAGCTGGGACCGAGGTATTGGAAGTCCTAAATATCCAGGAGTTCCCTATACTTTCTTCCCTCAAAGACAAGGATGTAAGGTTACTCTGTACCATGATGCTCACGTCCCTGATGATTTTGTCCCTAGAGTATCTCTTGCTGGAGGCAAGACTTACAAGCCTCATAGATGTTGGGAGGATGTTTTTGATGCAATCAACAATGCAAAGCACTTAATATACATTACCGGTTGGTCTGTTTATACTGAGATTACCTTACTAAGGGATTCTAAAAGGCAAAGGTCTGGGGAACCCATAACACTTGGTGAGCTTCTGAAGAAAAAAGCAGGCGAAGGTGTTAGGGTTTTATTGCTTATTTGGGATGATAGAACATCAGTTAAATTGTTGAAAAAAGATGGGTTGATGGCAACTCATGATGAAGAAACCGCGAAATACTTCGAGGGCACAGATGTTCACGGTGTCTTATGCCCCCGTGATCCTGATGATGGGGGAACCAAGATTCAAGATTTACAAATCTCCACCATGTTCACTCATCACCAGAAGATTGTGGTGGTGGACAGTGAGATGCCGACAAAAGGGTCTGATAAGCGGAGGATTGTGAGTTTTGTTGGGGGTCTTGATCTCTGTGATGGAAGATATGATACTGCTTTCCATTCGCTTTTCAGAACGCTGGACACAGCTCACCACGATGATTTTCATCAACCTAACTTTCCGGGAGCTGATATTAGAAAAGGTGGTCCTAGGGAACCTTGGCATGACGTCCACTCTCGGCTTGAAGGACCCATTGCTTGGGATGTTTTGTTTAACTTCGAGCAGAGATGGAGGAAGCAAGGTGGTAAGGATGTACTCATTACAAAGGAAGAGCTTGAATATGCCCTTATTCCTCCTTCCCCAGTGATGTTCCCAGAAGATCACGAGACATGGAATGTTCAGTTGTTTAGATCCATAGATGGTGGGGCTGCTTTTGGGTTCCCGGAGAGTCCTGAACAAGCAGCCAGAGCTGGGCTTGTTAGTGGGAAGGATAATATCATAGACCGAAGTATTCAAGATGCTTATATTCATGCTATTCGACGAGCAAAGAATTTCATCTATATTGAGAATCAGTACTTTCTTGGAAGCTCATTTTCGTGGAGTGGTGATGATATTAAGCCCGAGGACATTAATGCTTTGCATATTATCCCGAAGGAGCTTTCACTGAAGATTGTAAGTAAGATTGAAGCAGGGGAAAGGTTCACAGTGTATGTTGTGGTCCCAATGTGGCCAGAGGGTGTCCCGGACAGTGCATCGGTGCAGGCAATATTGGACTGGCAGAGGAGGACAATGGAGACAATGTACAAAGACATTACTAATAAACTAAGCGAGCAGGGGATCAGGGAGGATCCTAGGAAGTATTTGACATTCTTCTGCCTTGGTAATCGAGAGGAGAAGAAAGATGGAGAGTATGAGCCTGAAGAAGAACCAGAACCTGATTCCAATTATATAAAAGCTCAACAGGCACGTCGGTTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGATGAGTACATAATCGTTGGATCTGCAAACATCAACCAGAGATCAATGGATGGGGCGAGGGACACAGAGATTGCCATGGGAGCTTATCAGCCCCATCATTTGGCAACAAGGAATTCGCCTGCAAGGGGTCAGATCCATGGGTTCCGAATGGCATTATGGTATGAACACCTTGGGATGCTTGATGAGTCATTTAAGCAGCCAGAAAGCGAAGAATGTGTGGAGAAGGTAAACGAGATGGCAGACAAGTATTGGGAGCTATATTCAAATGATTCACTTGAACAGGACCTTCCTGGCCACCTGCTACGTTATCCTGTAAAGATTGGACATGGAGGACATGTCACAGAGCTGCCAGGATTTGAGTTCTTCCCAGACACCCAGGCTCGTATTCTTGGTGCCAAATCTGACTACTTGCCACCCATCCTTACTACTTAG 2430 0.4453 MAEPHLHGTLHVTIFEIDNLGANKNSNLFSKIMDSIEDTVGVGTGSSRIYATIDLEKARVGRTRVIDNDGSSLTWEESFHIYCAHVASNIIFTVKGANRVGATLIGRAHVPVREIMDGQEFDDWVKILDEDQKPLEGDSKIHVKLQYFDVKKDRSWDRGIGSPKYPGVPYTFFPQRQGCKVTLYHDAHVPDDFVPRVSLAGGKTYKPHRCWEDVFDAINNAKHLIYITGWSVYTEITLLRDSKRQRSGEPITLGELLKKKAGEGVRVLLLIWDDRTSVKLLKKDGLMATHDEETAKYFEGTDVHGVLCPRDPDDGGTKIQDLQISTMFTHHQKIVVVDSEMPTKGSDKRRIVSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGADIRKGGPREPWHDVHSRLEGPIAWDVLFNFEQRWRKQGGKDVLITKEELEYALIPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPESPEQAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFSWSGDDIKPEDINALHIIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPDSASVQAILDWQRRTMETMYKDITNKLSEQGIREDPRKYLTFFCLGNREEKKDGEYEPEEEPEPDSNYIKAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDTEIAMGAYQPHHLATRNSPARGQIHGFRMALWYEHLGMLDESFKQPESEECVEKVNEMADKYWELYSNDSLEQDLPGHLLRYPVKIGHGGHVTELPGFEFFPDTQARILGAKSDYLPPILTT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0195 809 PANTHER PHOSPHOLIPASE D 6 797 IPR015679 -
Glsi07g0195 809 Gene3D C2 domain 5 157 IPR035892 -
Glsi07g0195 809 SMART C2_3c 9 124 IPR000008 -
Glsi07g0195 809 SUPERFAMILY Phospholipase D/nuclease 443 739 - -
Glsi07g0195 809 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 150 IPR035892 -
Glsi07g0195 809 SUPERFAMILY Phospholipase D/nuclease 151 438 - -
Glsi07g0195 809 Pfam Phospholipase D C terminal 727 799 IPR024632 -
Glsi07g0195 809 FunFam Phospholipase D delta 201 443 - -
Glsi07g0195 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Glsi07g0195 809 FunFam Phospholipase D 467 700 - -
Glsi07g0195 809 Gene3D Endonuclease Chain A 475 703 - -
Glsi07g0195 809 SMART pld_4 326 364 IPR001736 GO:0003824
Glsi07g0195 809 SMART pld_4 654 681 IPR001736 GO:0003824
Glsi07g0195 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Glsi07g0195 809 PIRSF PLD_plant 1 809 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Glsi07g0195 809 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Glsi07g0195 809 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Glsi07g0195 809 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Glsi07g0195 809 Pfam C2 domain 8 126 IPR000008 -
Glsi07g0195 809 Gene3D Endonuclease Chain A 200 445 - -
Glsi07g0195 809 CDD C2_plant_PLD 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0195 Glsi-ChrGlsi07 1250102 1252857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0195 1 809 Phospholipase D Gene Family (Wang group) AT3G15730 74.599 0.0 1302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0164 06 1143278 1147123 Glsi07g0195 07 1250102 1252857 CCT
Glsi07g0195 07 1250102 1252857 Glsi06g0164 06 1143278 1147123 ECH
Glsi08g1590 08 11397724 11400206 Glsi07g0195 07 1250102 1252857 ECH
Glsi07g0195 07 1250102 1252857 Glsi07g0195 07 1250102 1252857 ECH