Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0187 ATGGGCTTATTCAGATGCGGAACCTTGTTTTTCTGTGTGCTCTGTCTGATTAGAGTGTGCCTGGCCAATGATCAACACATTCGCCAGATATATCCTGGATTCGAGACATCTCAGCTGGATTGGAACGACCGTGGTGGATTTTTCTTACAATCCAACAGCTCAGTTTTCGCTTTCGGATTCTTCGGTACCCTGGATGTTTCTTTGTTTGTTTTAGTTGTCGTTCACTTAACCAGCTACAAAGTGGTTTGGACTGCTAACAGAGGCTTACTAGTTAGAAATTCTGATAAATTTGTGTTTGACAATACTGGGAATGCATATCTGGAACGTGGGAATGGTGTGGTTTGGGCAACAAATACAAGAGGACAAAAAGTCAGAGCCATGGAATTGCAGGACTCAGGCAATTTAGTATTGCTTGGGGAAAATGGGACAGCTATTTGGCAGAGTTTTAGCCATCCCACTGATACCCTTTTACCCGGTCAAGTGTTTGTTGATGGAATGAGTCTCAAAAGCTTCCCCAACCGCAATAACTTGTTTCATTATCTTACCTATATGTCAGGTGATTTAGTTCTCTATGCAGGATATGAAACCCCACAGATATATTGGTCCCTATCAGGCATAGACCAGAAAAGCAAAAACAATGTCAGCAGGAAGGTTCACTCTGCTTCTTTGGTTTCCAATTCCTGGAATTTCTATGATAAAAGTGGAGTTTTACTATGGCAATCTGTGTTCTCCCAGCAATCCGATCCTAAGGCAACGTGGGCTGCAATTTTAGACCCTAATGGTGCAATCTCTTTCTATGATCTTAATAAGGGAAAGTCTGTTACCCCTGAGAAAACTAGAATACCACAAGACCCGTGTGGAATCCCCGAGCCTTGTGATCCTTATTATGTTTGCTTCTTCGAGAACTGGTGCGAGTGCCCAGCACTTCTAAAATCTCGTTTTGATTGCAAACCTCCGAACATCTCAACGTGTTCTAAAAGCCCAAAAGAGCTTCTTTATGTTGGTGAAGAGCTCGATTACTTTGCACTTAAGTACGTTGCGCCAGTTTTAAAATCAAGATCAACCCTGAATTCTTGCAAAGAAGCTTGTTTAAGGAACTGCTCTTGCCTTGTGCTTTTCTTTGAAAATGCTACTGGAAAATGCTTTCATTTTGATCAGACAGGGAGTTTCCAACGCTTTAAGGGGAGTTCTGGAGGTTACGTTTCATATATGAAGGTCTCCATTGATGGAAGAAATGAAAGACATCGCACACTAGCAGTCGTTGCCATAGTTTTGTTTACAATTCTGGTCATTGTTGGACTTGGAATGGGATTCTGGTACTACAAAAAGAAGCATTTGGCGGAGTATTCTCCAGAAACCTTGGAGGAAGATAATTTCTTGGACAGTCTTTCTGGGATGCCTGCTCGTTTCAGTTATAGTACTCTTAGCAGAGCCACCAAGAACTTCTCAACAAAAATTGGGGAAGGAGGTTTTGGCTCAGTCTATCTAGGTGTGCTTCAAGATGGCACCCAATTGGCTGTGAAAAAATTGGAAGGCGTTGGGCAAGGGACAAAAGAATTCAAAGCTGAAGTTTCCATCATAGGAAGCATTCATCATGTTCATCTGGTGAAGCTAAAGGGCTTCTGTGCCGAGGGCCCTCATCGTCTTCTTGTCTACGAATACATGGGGAGAGGTTCTTTGGACAAATGGATCTTCAGAAACCATGAAAATAGTTTCTTGTTGAATTGGGATACAAGATTCGACATTGCATTAGGTACAGCAAAGGGATTGGCCTATCTTCATGAGGAATGTGAAGCGAAGATCATTCATTGCGATATTAAACCAGAAAATGTTCTACTTGATGATAACTTCACGGCTAAAGTTTCAGATTTTGGATTGGCTAAGCTAATGAGCAGAGAACAGAGCCATGTCTTTACAACGCTAAGGGGTACAAGAGGATATCTGGCACCAGAATGGGTCACCAACTATGCAATTTCAGAGAAGAGTGATGTGTACAGCTATGGCATGGTGCTGCTTGAGATTATTGGAGGACGGAAGAATTATGATCAATGGGAAGGGTCGGAGAAAGCACATTTTCCTACTTATGCCTTCAGGATGATGGAAGAAGGAAAACTGCAACAAGTTCTTGACTCAAAGATAGATATTGAGGAGAATGATGAAAGAGCTGTGACTGCAATTAAAGTTGCTCTATGGTGCGTACAAGATGACATGAATTTGAGGCCTTCAATGTCAAAGGTAGTGCAAATGCTTGAAGGTATGTTCCCAGTACCTGATCCTCCACCATCATCTAAACTGGGTTCTTATTCATTCTTCTTGAAAATGAGTAGTGGAGAAGCTTCTTCATCGGGACAGGCTAGTTTTTATAGTAATGTACCCCGCTCTTGTGTTCAGTTATCAGGACCTAGATGA 2409 0.4201 MGLFRCGTLFFCVLCLIRVCLANDQHIRQIYPGFETSQLDWNDRGGFFLQSNSSVFAFGFFGTLDVSLFVLVVVHLTSYKVVWTANRGLLVRNSDKFVFDNTGNAYLERGNGVVWATNTRGQKVRAMELQDSGNLVLLGENGTAIWQSFSHPTDTLLPGQVFVDGMSLKSFPNRNNLFHYLTYMSGDLVLYAGYETPQIYWSLSGIDQKSKNNVSRKVHSASLVSNSWNFYDKSGVLLWQSVFSQQSDPKATWAAILDPNGAISFYDLNKGKSVTPEKTRIPQDPCGIPEPCDPYYVCFFENWCECPALLKSRFDCKPPNISTCSKSPKELLYVGEELDYFALKYVAPVLKSRSTLNSCKEACLRNCSCLVLFFENATGKCFHFDQTGSFQRFKGSSGGYVSYMKVSIDGRNERHRTLAVVAIVLFTILVIVGLGMGFWYYKKKHLAEYSPETLEEDNFLDSLSGMPARFSYSTLSRATKNFSTKIGEGGFGSVYLGVLQDGTQLAVKKLEGVGQGTKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMGRGSLDKWIFRNHENSFLLNWDTRFDIALGTAKGLAYLHEECEAKIIHCDIKPENVLLDDNFTAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWVTNYAISEKSDVYSYGMVLLEIIGGRKNYDQWEGSEKAHFPTYAFRMMEEGKLQQVLDSKIDIEENDERAVTAIKVALWCVQDDMNLRPSMSKVVQMLEGMFPVPDPPPSSKLGSYSFFLKMSSGEASSSGQASFYSNVPRSCVQLSGPR 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0187 802 ProSitePatterns Protein kinases ATP-binding region signature. 486 509 IPR017441 GO:0005524
Glsi07g0187 802 SMART serkin_6 480 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0187 802 FunFam S-receptor-like kinase 5 555 759 - -
Glsi07g0187 802 Gene3D Phosphorylase Kinase; domain 1 448 554 - -
Glsi07g0187 802 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 762 - -
Glsi07g0187 802 Gene3D Transferase(Phosphotransferase) domain 1 555 754 - -
Glsi07g0187 802 SMART blect_4 40 152 IPR001480 -
Glsi07g0187 802 CDD B_lectin 45 152 IPR001480 -
Glsi07g0187 802 Pfam D-mannose binding lectin 81 161 IPR001480 -
Glsi07g0187 802 Pfam Protein kinase domain 483 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0187 802 CDD STKc_IRAK 486 753 - -
Glsi07g0187 802 ProSiteProfiles Protein kinase domain profile. 480 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0187 802 SUPERFAMILY Protein kinase-like (PK-like) 462 751 IPR011009 -
Glsi07g0187 802 CDD PAN_AP_plant 355 407 - -
Glsi07g0187 802 PIRSF SRK 3 798 IPR024171 GO:0004674
Glsi07g0187 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Glsi07g0187 802 Gene3D - 42 151 IPR036426 -
Glsi07g0187 802 ProSiteProfiles Bulb-type lectin domain profile. 34 150 IPR001480 -
Glsi07g0187 802 FunFam serine/threonine-protein kinase PBS1-like 449 554 - -
Glsi07g0187 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 203 IPR036426 -
Glsi07g0187 802 ProSiteProfiles PAN/Apple domain profile. 324 407 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0187 Glsi-ChrGlsi07 1228492 1230900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0187 456 762 Receptor kinase-like Gene Family AT5G20050 46.914 1.33e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi07g0187 Pkinase 5.7e-52 CL0016