Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0179 ATGTTTGGTACATCGTCCCTGTCATGTTTCTCGATCACGCCTCTGGGAAGTGGGAAGGAAGAGGGTGCAGAGAAGGTGGCACTGATTGGTGGGAAGGTTATGGCTTTTTGCTCTATATTTTTCTGTGGAAAGGGTTCGGATCGCAAAGCAAGAGGAAAGAAAGTAACTACATGGAGGGTCTTTTCTTTGAAGGAACTACACTCGGCTACAAATAATTTCAACTATGATAACAAGCTTGGAGAAGGGGGATTTGGCAGTGTTTACTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGATATGGAATTTGCTGCCGAAGTTGAGATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTTCGTGGGTATTGTGCTGAAGGGCAGGAACGGCTAATTGTATATGACTATATGCCGAATTTGAGCCTACTCTCTCATCTTCATGGACACCACTCGGCAGAATGCCTTCTTGATTGGAACAGACGGATGAATATTGCAATTGGGTCAGCTGAGGGAATTGCATATCTCCACCACCAAGCAACACCACACATCATCCACAGAGATATCAAAGCAAGCAATGTGTTATTGGATGCAGATTTCAAGGCTCAGGTTGCTGATTTTGGTTTTGCTAAGTTGATCCCTGATGGAGCAACACATGTGACTACAAGAGTTAAGGGAACCCTTGGCTACCTTGCACCAGAATATGCCATGTTGGGTAAAGCGTCTGAGAGTTGTGATGTCTACAGTTTTGGAATTCTGCTGCTAGAACTTGCTAGTGGCAAGAGACCAATTGTAAAACTGAATACCACAACGAAGCGATCAATAACTGATTGGGCATTACCGTTGGCTTGTGACAAGAAATTTAGTGAAATTGCAGATCCGAGGCTAAATAGTAACTACATGGAGGAAGAGCTCAAAAGGATCATTTTTGTTGCACTCATATGTGCTCAGAACCAGCCTGACAAGAGACCTAAAATGCTTGAGGTCGTAGAGCTGCTGAAGGGAAATTCTAAAGATGAGTTTTCTCAGCTAGAAAATAATGAATTGTTTAAAAGCCCTCCAGCTTCAGCTTCTGAAGAGAGTTTAGACTTCATCTCAGAAGAGAAGGAATCGAAATATGAGTTCAAAGAGAATACTGAGCTATAA 1179 0.4275 MFGTSSLSCFSITPLGSGKEEGAEKVALIGGKVMAFCSIFFCGKGSDRKARGKKVTTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAAEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSAECLLDWNRRMNIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDADFKAQVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGKRPIVKLNTTTKRSITDWALPLACDKKFSEIADPRLNSNYMEEELKRIIFVALICAQNQPDKRPKMLEVVELLKGNSKDEFSQLENNELFKSPPASASEESLDFISEEKESKYEFKENTEL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0179 392 Pfam Protein tyrosine and serine/threonine kinase 75 344 IPR001245 GO:0004672|GO:0006468
Glsi07g0179 392 Gene3D Phosphorylase Kinase; domain 1 45 148 - -
Glsi07g0179 392 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Glsi07g0179 392 FunFam PTI1-like tyrosine-protein kinase At3g15890 45 148 - -
Glsi07g0179 392 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 364 - -
Glsi07g0179 392 ProSiteProfiles Protein kinase domain profile. 73 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0179 392 FunFam PTI1-like tyrosine-protein kinase At3g15890 149 360 - -
Glsi07g0179 392 CDD STKc_IRAK 79 346 - -
Glsi07g0179 392 SMART serkin_6 73 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0179 392 SUPERFAMILY Protein kinase-like (PK-like) 55 344 IPR011009 -
Glsi07g0179 392 Gene3D Transferase(Phosphotransferase) domain 1 149 362 - -
Glsi07g0179 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0179 Glsi-ChrGlsi07 1193739 1197059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0179 61 357 Trihelix Transcription Factor Family AT1G70460 49.502 1.26e-95 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Glsi07g0179 Pkinase 1.8e-43 CL0016