Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0175 ATGGCCATTATATCTCTCTCATTTCTCCCTCCTCTACTCCCACCCTCCACTTCTATTTCTTCCTCTTCTTCTTACTTATTTGGCGGGATCCATCTCCGCTCCCATCAAAACTTCATCTCTGTCCATTCTCCTTCTACTTTGCTTTCTTCGACGTTAAATACGAAGCTCTCTTCTAGGCGCCTGGGAACAGTGGCTGTTGCTTCTGGCGATTATTATTCTACTCTTGGTGTCCCCAAATCTGCCACGGGCAAGGAAATTAAAGCTGCTTATCGAAGGTTAGCTCGCCAGTACCATCCTGATGTGAACAAGGAACCTGGAGCAACTGAAAAGTTCAAAGAGATCAGTGCAGCATATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATATGATCAATATGGAGAGGCTGGAGTTAAGAGCACAGTGGGAGGAGCATCAAATACTTACGCGACTAGTGCATTTGATTTATTTGAAACATTTTTTGGGCCAAGTATGGGTGGCTTCCCTGGCATGGATCCAACTGGATTTGGAACACGTCGTCGCAGTACTGTTACTAAGGGTGAAGATATCCGTTATGATATCTCCTTGGAATTTTCTGAGGTAATTTTTGGAGCAGAAAAAGAATTTGAGCTTTCCCATTTGGAAACTTGTGAAGTCTGTATTGGTACTGGATCAAAGATGGACTCCAAGATGAGAATATGCTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACAGAACAAACACCTTTTGGATTGTTCTCACAGGTTTCAGTATGTCCAAACTGTGGAGGGGATGGTGAAGTCATATCTGAATATTGCAGTAAATGCAGTGGGAAAGGACATCTACGGGTTAAGAAAAATATTAAAGTGAAAGTTCCTCCTGGGGTTAGCTCAGGCAGTATATTGAGAGTTGCTGGGGAGGGTGACGCTGGACCAAGAGGGGGCCCTCCAGGAGACCTTTATGTGTATCTTGATGTGGAAGAAATACCAGGAATTCAAAGAGATGGCATTAATCTCTGGTCAACTATAACAATCAGTTATCTAGACGCCATACTAGGGTCCATTGTCAAGGTAAAGACAGTTGAAGGCATTTCTGAACTACGAATACCTCCTGGTACACAACCTGGAGATGTCCTTGTCCTTGCAAGGAAAGGTGCACCAAAATTGAACAAACCATCAATTCGCGGTGACCACTTATTTACAGTTAAAGTTACAATACCAAAACGTATTAGTATAAAGGAACGTGAGCTGCTTGAAGAACTTGCTTTGCTAGGCAACACAACAAACAACCGTTCAAAATCTCATCCTAGAATTCAATCTTCCACAGGAAGTACTGAAGGTCCAGCATCTCAAATTGAAGAAAGTCCATCGGCGACAGTTGCAGAAAAAGATGAAAAATTAGGAGATCAAAATGATATATGGAAGAAGTTAAGGGATATTGCTGGGTCTGTTGCAAATGGAGCTTTAAAGTGGCTAAAAGATAATCTCTAG 1494 0.4264 MAIISLSFLPPLLPPSTSISSSSSYLFGGIHLRSHQNFISVHSPSTLLSSTLNTKLSSRRLGTVAVASGDYYSTLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSTVGGASNTYATSAFDLFETFFGPSMGGFPGMDPTGFGTRRRSTVTKGEDIRYDISLEFSEVIFGAEKEFELSHLETCEVCIGTGSKMDSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCSKCSGKGHLRVKKNIKVKVPPGVSSGSILRVAGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGINLWSTITISYLDAILGSIVKVKTVEGISELRIPPGTQPGDVLVLARKGAPKLNKPSIRGDHLFTVKVTIPKRISIKERELLEELALLGNTTNNRSKSHPRIQSSTGSTEGPASQIEESPSATVAEKDEKLGDQNDIWKKLRDIAGSVANGALKWLKDNL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0175 497 SMART dnaj_3 69 126 IPR001623 -
Glsi07g0175 497 Gene3D - 187 323 - -
Glsi07g0175 497 NCBIfam molecular chaperone DnaJ 70 423 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Glsi07g0175 497 FunFam Chaperone protein dnaJ A6 chloroplastic 217 281 - -
Glsi07g0175 497 Pfam DnaJ domain 70 131 IPR001623 -
Glsi07g0175 497 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 25 434 - -
Glsi07g0175 497 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 204 283 IPR036410 -
Glsi07g0175 497 MobiDBLite consensus disorder prediction 429 458 - -
Glsi07g0175 497 Gene3D - 217 281 - -
Glsi07g0175 497 ProSiteProfiles Zinc finger CR-type profile. 204 286 IPR001305 GO:0031072|GO:0051082
Glsi07g0175 497 ProSiteProfiles dnaJ domain profile. 70 134 IPR001623 -
Glsi07g0175 497 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 340 IPR008971 GO:0006457|GO:0051082
Glsi07g0175 497 Gene3D DnaJ domain 67 170 IPR036869 -
Glsi07g0175 497 FunFam Putative Mitochondrial DnaJ chaperone 277 323 - -
Glsi07g0175 497 CDD DnaJ 70 123 IPR001623 -
Glsi07g0175 497 Gene3D - 333 424 - -
Glsi07g0175 497 CDD DnaJ_C 188 411 - -
Glsi07g0175 497 Pfam DnaJ C terminal domain 190 408 IPR002939 -
Glsi07g0175 497 FunFam Molecular chaperone Hsp40/DnaJ family protein 333 425 - -
Glsi07g0175 497 Hamap Chaperone protein DnaJ [dnaJ]. 67 481 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Glsi07g0175 497 Pfam DnaJ central domain 217 281 IPR001305 GO:0031072|GO:0051082
Glsi07g0175 497 SUPERFAMILY HSP40/DnaJ peptide-binding domain 334 419 IPR008971 GO:0006457|GO:0051082
Glsi07g0175 497 FunFam Chaperone protein dnaJ A6 chloroplastic 67 173 - -
Glsi07g0175 497 PRINTS DnaJ domain signature 106 126 IPR001623 -
Glsi07g0175 497 PRINTS DnaJ domain signature 126 145 IPR001623 -
Glsi07g0175 497 PRINTS DnaJ domain signature 90 105 IPR001623 -
Glsi07g0175 497 PRINTS DnaJ domain signature 72 90 IPR001623 -
Glsi07g0175 497 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Glsi07g0175 497 CDD DnaJ_zf 217 281 IPR001305 GO:0031072|GO:0051082
Glsi07g0175 497 MobiDBLite consensus disorder prediction 429 467 - -
Glsi07g0175 497 SUPERFAMILY Chaperone J-domain 68 175 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0175 Glsi-ChrGlsi07 1152931 1161892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0175 71 177 C2H2 Transcription Factor Family AT1G74250 38.655 8.92e-11 62.4