Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0143 ATGTCGACTAGTTCTAGTACAGTGATAGGAGGAGCCTCATCGGACGAAGTGATCCGGCCGCCGACTATGCTGGTTCCCGGCGAGAGAAGTGAATCTTCATCCTCCTCCTTCTCCTTGTCCAATTTAACCCAGGCGTTTCCTTTCTCTTCTGGAAACCCTAGAATCGAGGAGACGAGAGGTGTCATGCATCTCTATCGCGAGGATCCCACTTCGTCGTCGGCTTTTGATCTACCTGTTGCACGGAAGCCGCTTGTCTGTGTGCTTGGAGTTCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGCGGTTCATTTATTCAGCATATCTCAGAGATGCGGATTGTCAGAAACGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGTTTTGATGATCAAGACTCTACGGATGGTTTCTACATTCATTATAATAGGCGCCGTTTCTCATCTTTGGAGGTGGAGGTTTGCCGTGTTCTTTTCACATTAGATGTGCAGTATACTGGCTCAATTGAACATGCACAAGCATCTAATGCTAGTTCAACTGAACAGCCTACATGTCCAGTCTGCCTTGAGCGATTGGATCAAGATACAAATGGAATTCTTACAACTATATGCAATCATTCATTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCAGTATGCCGGTACTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACTACTGAGAACCTCTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAAATATAAAGCAGGACATGCCATAATACACTGGAAAGAGACACAGCATTGCTACTCCCTAGAAGTGGAAACACAACGCGTGTGGGATTATGCGGGAGACAACTACGTTCATAGACTAATCCAGTCCAAAACTGATGGAAAATTAGTTGAGTTAAATTCTCACTGTGTGCACACAGACAATGTGTGTGGAAGTTGCAGCTGTGAAGATAATGGCACGAGTGAGGCTATACTTAACAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGACTTGCTTGCTACTCAACTTGAAAACCAAAAATCATACTTTGAGTCCTTACTACAAGAAGTAAAAGAAGAAACTGAAAGAGATATTTCCAAAGCTGTTGAGAAGGCTGTCTCTCTTAAACTGCAGAAGTTGCAGTCCAAGCTTGACAGATGTAATAAAGAGAAAAAATTTCTGGATGATCTTAATGAGAATCTTCTGAAAAATCAAGATATTTGGAAAGCAAAGATACTTGAGATTGAAGAGAGGGAGAAAAAAGCTTTAAAACTGAAGGATGATAAAATAAGGGACCTGGAAGAGCAGCTTAGGGATCTCATGGTTTGTCTTGAAGCTGGGAAGACTGTAGAATAG 1392 0.4203 MSTSSSTVIGGASSDEVIRPPTMLVPGERSESSSSSFSLSNLTQAFPFSSGNPRIEETRGVMHLYREDPTSSSAFDLPVARKPLVCVLGVPNHMTYADFCQFCGSFIQHISEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYIHYNRRRFSSLEVEVCRVLFTLDVQYTGSIEHAQASNASSTEQPTCPVCLERLDQDTNGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGKYKAGHAIIHWKETQHCYSLEVETQRVWDYAGDNYVHRLIQSKTDGKLVELNSHCVHTDNVCGSCSCEDNGTSEAILNSKVEAIVNEYNDLLATQLENQKSYFESLLQEVKEETERDISKAVEKAVSLKLQKLQSKLDRCNKEKKFLDDLNENLLKNQDIWKAKILEIEEREKKALKLKDDKIRDLEEQLRDLMVCLEAGKTVE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0143 463 Pfam Ring finger domain 186 227 IPR001841 -
Glsi07g0143 463 Pfam BRCA1-associated protein 2 78 174 IPR011422 -
Glsi07g0143 463 SMART Zf_UBP_1 237 286 IPR001607 GO:0008270
Glsi07g0143 463 SUPERFAMILY RING/U-box 203 302 - -
Glsi07g0143 463 ProSiteProfiles Zinc finger UBP-type profile. 221 314 IPR001607 GO:0008270
Glsi07g0143 463 Pfam Zn-finger in ubiquitin-hydrolases and other protein 238 297 IPR001607 GO:0008270
Glsi07g0143 463 Coils Coil 352 416 - -
Glsi07g0143 463 ProSiteProfiles Zinc finger RING-type profile. 187 227 IPR001841 -
Glsi07g0143 463 SMART ring_2 187 226 IPR001841 -
Glsi07g0143 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 229 IPR013083 -
Glsi07g0143 463 MobiDBLite consensus disorder prediction 1 36 - -
Glsi07g0143 463 CDD RRM_BRAP2_like 85 166 - -
Glsi07g0143 463 SUPERFAMILY RING/U-box 177 227 - -
Glsi07g0143 463 CDD RING-H2_BRAP2 185 228 IPR047243 -
Glsi07g0143 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 306 IPR013083 -
Glsi07g0143 463 PANTHER BRCA1-ASSOCIATED PROTEIN 28 462 - -
Glsi07g0143 463 Coils Coil 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0143 Glsi-ChrGlsi07 908885 913081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0143 183 227 C3H Transcription Factor Family AT1G72220 46.809 5.57e-07 49.7