Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0141 ATGATTATCCCATTCCGTGCAATGAATCCAACGGGGGAAAAGCAAATTGCTTATGACAGCGATATCTTCAATCAACGGCATCAGAACTCATTTGATGAGGAAGAGTTCCTGAGGAAAATCCTCCTCCAACCTTCCTTATCTACTGAAACTGAAAGTCACTTTTCCACTATTCAAAACAATTTCATCTCTAAAATTGCTTCTTCACATAAGAAACCCTCATCCTCATCGTCTCCATCAACTTGTATTCTGTCTTTCGATAATTCAACTCTAAAACCAGCAGCTACCCACGATGCTAATTATAGAAAACATCGTGACTCTGCCCCCTTCAATCCTACCCATGAGCAATTGGACATTACTGGACCCACACTTTCTTCCCATTTGTCCACAAAACGGGGCCTACAAAACCATAACTCTTCTCTGACTGATCAACCAAAGGACAGTCAACGATCAAAGAAGGCTAGAAGTTTCTCTGAGGCACTAGATCACATAGTGGCCGAGAGAAATAGGAGACATCGTCTCAGAGAGCAGTTTATAGCACTTGCAGCTACTATTCCTGGTTTGAAGAAGATTGACAAGGCGTCTATACTTAGCGAAGCTGTCAAACACATGAAACAACTTCAAGAGCGTGTAAAAGAGTTAGAGCAACAAAGCAAGAAGACAAGTGTTGATGAAGAAACAACCTCTGATTGTGAAATGATGAGCTCTCGTGATTGCTATAGACTTGATGAGGCCCTCCCCGAAGTTGAAGCAAGACTCTTACACAAACAAATGCGCATCAGAATCCACTGTGAGGAACGTCCAGGCATTATGCTCGAAATATTGGCCCGCCTTCAAACTCTTCATTTCTCTATAATCATGGTTTGTGGGTTCAACATGTCAATGAAAGGGTGCCTTACGGGTCGTTTCTGTTCAATTAGAAGGAGCCAGACACAGGAAAGCAAGCTGATGCTGATTTGCCTCTTGTTCCCTCGTCTCCATATCCATAACCCCACTCTAATGGAGGTGCCATGGCAGAGTTGGTTCTCTGATTTGGATGTAGATGACTGCGATACCTTCAATCAATGCCACCAAAACTCATTTGATGAGGAAGAGTTCCTGAGGGAGATTCTCGACCAACCTTCCTTATCTTCTGAAACTGAAAGTCACTCTTCCACTATTCAAAACAATGCCATGGCAAAACTTTCTTCTTCACATAAGAAACCCTCATCCTCATCGTCTCCATCAACTTATATTCTGTCTTTCGATACAACTCTAATACCAGCTGCTACCCACGATGCTAATAATAGAAAACATCGTGGCTCTGCACCCTTCAATCCTACCCATGAGCAATTAGACGTTACTGGACCCACACTTTCTTCCCATTTGTCCACAAAACGGGGCCTACAAAACAATAACTCTACTCTCACTGATCAAACAAAGGCCAATCAACGATCAAAGAAGGCTAGAAGTTCCTCTGAGGCACTAGATCACATAGTGGCCGAGAGAAATAGGAGACAGCATCTCAGAGAGAAGTTTATAGCACTTGCAGCTACTATTCCTGGCTTGAAGAAGATTGACAAATCGTCTATACTTAGCGAAGCTGTCAAACACATGAAACAACTTCAAGAACGTGTAAAAGAGTTAGAGCAACAGAGCAAGAAGACAAATTTTGATGAAGAAACAACCTCTGATTGTGAAATGATGAGCTCTCGTGATTGCTATAGACTTAATGAGGCGCTCCCCGAAGTTGAAGCAAGACTCTTACACAAACAAATACGCATCAGAATTCACTGTGAGAAACATCCAGGCATTATGCTCAAAATATTGGCCCACCTTCAAACTCTTCATTTCTCTATAATCAGTAATAACGTCTTCCCATTTGGGAATTCCACTCTTGACATTACCATTATTGCTGAGGTTGGTGACAAATACAACATAGCAGCGAAGGAATTAGTGAAAAAGCTGAGACTGGCTCTGTTGGAGTCACCTCGCATCCAAGAGTGA 1983 0.4231 MIIPFRAMNPTGEKQIAYDSDIFNQRHQNSFDEEEFLRKILLQPSLSTETESHFSTIQNNFISKIASSHKKPSSSSSPSTCILSFDNSTLKPAATHDANYRKHRDSAPFNPTHEQLDITGPTLSSHLSTKRGLQNHNSSLTDQPKDSQRSKKARSFSEALDHIVAERNRRHRLREQFIALAATIPGLKKIDKASILSEAVKHMKQLQERVKELEQQSKKTSVDEETTSDCEMMSSRDCYRLDEALPEVEARLLHKQMRIRIHCEERPGIMLEILARLQTLHFSIIMVCGFNMSMKGCLTGRFCSIRRSQTQESKLMLICLLFPRLHIHNPTLMEVPWQSWFSDLDVDDCDTFNQCHQNSFDEEEFLREILDQPSLSSETESHSSTIQNNAMAKLSSSHKKPSSSSSPSTYILSFDTTLIPAATHDANNRKHRGSAPFNPTHEQLDVTGPTLSSHLSTKRGLQNNNSTLTDQTKANQRSKKARSSSEALDHIVAERNRRQHLREKFIALAATIPGLKKIDKSSILSEAVKHMKQLQERVKELEQQSKKTNFDEETTSDCEMMSSRDCYRLNEALPEVEARLLHKQIRIRIHCEKHPGIMLKILAHLQTLHFSIISNNVFPFGNSTLDITIIAEVGDKYNIAAKELVKKLRLALLESPRIQE 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0141 660 Pfam Helix-loop-helix DNA-binding domain 490 535 IPR011598 GO:0046983
Glsi07g0141 660 Pfam Helix-loop-helix DNA-binding domain 162 207 IPR011598 GO:0046983
Glsi07g0141 660 MobiDBLite consensus disorder prediction 440 474 - -
Glsi07g0141 660 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 490 547 IPR036638 GO:0046983
Glsi07g0141 660 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 219 IPR036638 GO:0046983
Glsi07g0141 660 MobiDBLite consensus disorder prediction 112 144 - -
Glsi07g0141 660 Coils Coil 524 551 - -
Glsi07g0141 660 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Glsi07g0141 660 MobiDBLite consensus disorder prediction 98 156 - -
Glsi07g0141 660 PANTHER BHLH TRANSCRIPTION FACTOR 352 654 - -
Glsi07g0141 660 SMART finulus 163 212 IPR011598 GO:0046983
Glsi07g0141 660 SMART finulus 491 540 IPR011598 GO:0046983
Glsi07g0141 660 MobiDBLite consensus disorder prediction 426 487 - -
Glsi07g0141 660 Gene3D - 143 222 IPR036638 GO:0046983
Glsi07g0141 660 Gene3D - 464 549 IPR036638 GO:0046983
Glsi07g0141 660 Coils Coil 196 223 - -
Glsi07g0141 660 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 485 534 IPR011598 GO:0046983
Glsi07g0141 660 MobiDBLite consensus disorder prediction 376 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0141 Glsi-ChrGlsi07 864119 869834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0141 340 652 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 31.977 3.06e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi07g0141 HLH 1e-08 No_clan