Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0140 ATGGGAAGACCCTCCCCGGATGAACAGTACCTCACAAAGGAGGATGTAGATGACAGCGATATCTTCAATCAGTGCCACCAGAACTCATTTGATGAGGACGAGTTCCTAAGAGAGATCCTCCTGCGACCTTCCTTATCTTCTGAAACTGAAAGTCACTCTTCCACTATTCAAAAAAATTCCATCTCTAAAGTTGCTTCTTCAGATCAGAAACCCTCGTCCTCATCGTCTCCATCAACTTATATTCTGTCTTTCGATAATTCAACTCTAATACCAGCTGCTACCCACGATGCTAATTATAGAAAACATCATGACTCTGCCACCTTGAAGCCTAGCCATGAGCAGTTAGACATTACTGGACCCACACTTTCTTCCCATTTATTCACAAAACGGGGCCTACAAAACCATAACTCTGCTCTCTCTAATCAACCAAAGGCCAATCAACGATCAAAGAAGGCTAGAAGTTCCTCTGAGGCACTAGATCACATAGTGGCCGAGAGAAATAGGAGACAGCATCTCAGAGAGAAGTTTATAGCACTTGCAGCTACTATTCCTGGTTTGAAGAAGATTGACAAGGCGTCTATACTTAGCGAAGCTGTCAAACACATGAAACAACTCCAAGAACGTGTAAAAGAGTTAGAGCAACAAAGCAAGAAGACAAGTATTGATGAAGAAACAACCTCTGATTGTGAAATGATGAGCTCTCGTGATTGCTATAGACTTAATGAGGCGCTCCCCGAAGTTGAAGCAAGACTCTTACACAAACAAATGCGCATCAGAATTCACTGTGAGAAACAACCAGGGATTATGCTCAAAATATCGGCCCACCTTCAAACTCTTCATTTCTCTATAATCAGTAGTAACGTTTTCCCATTTGGGAATTCCACTCTTGACATTACCATTATTGCTGAGGTTGGTGACAAATACAACATAGCAGTGAAGGAACTAGTGCAAAAACTGAGATTGGCTCTTGGCGGAGCCAGTATAGTTCAGGGACATGCCCAAGAAGATTGGGTAAAATTTAATGTAGATGGTTCTGTTGATGAAGATCACCAAGTTGGTGGTGGTGAGGGAATCCCCATGGGCTTACAGATGTCTTGGGAAGCAGGCTACAGGAAGATAACCATCGAAGCTGATTCTCAAACGACTGTTGATATGGTCAATAATGGTTGCAAGGGAGCTCATCCTTGTTGGAATATGCTGACTGCTGCTCGAAGGCTAACTAGCCTAAGATGGTGCATGCGTATCGTGAAGCCAATTTTGTGGCAGATTGGTTAG 1275 0.4306 MGRPSPDEQYLTKEDVDDSDIFNQCHQNSFDEDEFLREILLRPSLSSETESHSSTIQKNSISKVASSDQKPSSSSSPSTYILSFDNSTLIPAATHDANYRKHHDSATLKPSHEQLDITGPTLSSHLFTKRGLQNHNSALSNQPKANQRSKKARSSSEALDHIVAERNRRQHLREKFIALAATIPGLKKIDKASILSEAVKHMKQLQERVKELEQQSKKTSIDEETTSDCEMMSSRDCYRLNEALPEVEARLLHKQMRIRIHCEKQPGIMLKISAHLQTLHFSIISSNVFPFGNSTLDITIIAEVGDKYNIAVKELVQKLRLALGGASIVQGHAQEDWVKFNVDGSVDEDHQVGGGEGIPMGLQMSWEAGYRKITIEADSQTTVDMVNNGCKGAHPCWNMLTAARRLTSLRWCMRIVKPILWQIG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0140 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Glsi07g0140 424 CDD ACT 258 315 - -
Glsi07g0140 424 Gene3D - 142 220 IPR036638 GO:0046983
Glsi07g0140 424 Coils Coil 195 222 - -
Glsi07g0140 424 Pfam Reverse transcriptase-like 349 404 IPR002156 GO:0003676|GO:0004523
Glsi07g0140 424 SMART finulus 162 211 IPR011598 GO:0046983
Glsi07g0140 424 ProSiteProfiles ACT domain profile. 257 334 IPR002912 -
Glsi07g0140 424 MobiDBLite consensus disorder prediction 46 79 - -
Glsi07g0140 424 MobiDBLite consensus disorder prediction 136 158 - -
Glsi07g0140 424 CDD RNase_H_like 341 416 IPR044730 -
Glsi07g0140 424 Pfam Helix-loop-helix DNA-binding domain 161 206 IPR011598 GO:0046983
Glsi07g0140 424 PANTHER BHLH TRANSCRIPTION FACTOR 22 323 - -
Glsi07g0140 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0140 Glsi-ChrGlsi07 844886 849753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0140 9 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 31.361 4.28e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi07g0140 RVT_3 5.2e-05 CL0219