Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0125 ATGATGAATGGATGCCAAAAATCCTCCAATATTTCGGGCCAATCATACGACTCGCTCTATGTCAATCCCCTCACTGAACTCAGGCACAGTCGTAGCTGCAGCGACTATGGCCGCTCAGCCTGTAAAGGTGATGACTTCGAAGATTTTACGCACCGAGACCGCAAAATCTTATGGGATAATAAAGAGAATGCCACGCCCATCAAGAAAGAAATTGAAGTTTTAGGTGACAAGGAAAATGCAGTGCCCATAAATGGGTCTTCTACTGTGCCCAAAAAGTTCTCAAATTCCAGGTCTTTGTCCACAGATAGGATTTTGAAGCCCTCCTCGCTTCAGTTCTGTATGCAAATGAACGATCCCGAAAAGGCGTTTGGGTCGAAGATATGGGACCGTAATGAATCGGAGAATTCAAGCTCTTTGAATGTTTGGGACTACTCTGATTCAGAGGCAGCTCCAGCTTCATCCTGGTCGACACTGCCTAATAAGTCTTTGATCTGTAGACCATTGCCTATAGATATTGGAAGATGTACCTGCGTTATTGTGAGGGAAGCAACGCCAGAAGGACTATCTGGGGGCACTCTGTTTTCTCTTTATACCTATGAAGGTCAGGGACGGCAGAATAGGAAACTGGCTGTGGCTTACCACAAGCGGCGGAATGGGAGGTCTCACTTCACCATAGCTCAGAATGTAAAAGGACTATTATCCAATTTAGATGATAGTTTTCTTGGAACTGTCATGGCTAACCTCATGGGCTCAAAATATCGCATATGGGATCAGGGATATCGTCATAACTCCCGTGGAAAACAGCCAAAACCACCTCTGGCTGTTGTGAAATTCATACCTACTATAGCTACATGTGCGGGAAGTTACAGAAGCATGAGGGCCTATGTACCCAAGCATCAGTCTATGTCACTGAAGAGCACAAGTCAGGTACAACATATCAAAGGATTGCCAATCGACTGGGAAGGAAAGTTGGACAAAGTCCACCAGCTATTCTCAAGGGTACCACTTTACAACAAGATTTCGAAGCAACTTGAACTTGACTTCAGAGATAAAGGAAGGGCGGGACTTAGAATCCAAACCTCAGTAAAAAACTTCCAGCTGACTTTGGAGGAGAATGGGAGGCAGACGATCCTGCAGCTAGGTAGGGTGGCAAAATCAAAGTTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCATTTTGCATATGTTTGGCTTCCATTGACACAAAGCTTTGTTGCTCAGTCCTAGTTTTAGCAGAAGTAGCTGCTATTCCTGCTTCCGGAAATCAGGCAGAAGTTAAACTGAGAAATTTTTTTTATGAATTGTGCAAGTGGAATTTTCACATGCGTAAGGCCATTAATTTTCAATGCAAACAGTTTCGCAGTAAAGTAAACTCAGCTTTCAAAAGCCAACCTGACAGAGTATGGGATGGAAAGCGATTCTCAGAGTGTTTTGAAGACATATATCCTTATTGTTTTTCAGATTTTGGTTTTGGATTGAACGTAGTGACTATCGTTATAATTGTTGTGCTTGGATTCACTCAGAAGAGCAGCAGAGGAATTCAAAGAGCAGATGCCCAGATAACCCTTTCGGAGAAATTTGTCCTGCATTTTGTACCAGCTGTTGGAGCATGTCTTTCATTCTTGGACATAATTTTTCTGTGGAAGAGAGAACTTAATAGGCACTTTGTTGGTTATCATAAATGGTTTTATAGTTGTTCTGAGTTGATAGTGTGGACAAATATCATTCGCTTCTCAAAGTGTGCCCGCAGTCAATACATATTCTGCAACTATGTCTTATGTTACTGGTGGATTCTGAAACCAATATTCTGGATCTTCCATTTGCTGACTAAGTTCCCATCATTGGAGATTCCAATACTTATCATGGAAAGCTCTATTGTTCTATTGAATATCACATTTGGCATAGCTATCAATGTGATCAGGGTAAAGAGATCATCTTCCAAAAGCAGTTTATTGGAAGATCCTCTTCTTTCCAATGACATGGACCCTGAGGAAGGTTGCCATTGTGGCCTCGAAAATACTGGGAGATTTTGGAATTTGATGACTTTCAACTTGATAACTCCTGTAATGAATCATGGTATGGTTAAGCAACTGGACTCTGAAGATCTTCTGCAGCTACCTCCTGATATGGATCCTTCTTCCTGTCATGATATAATTTTAACCTGCTGGCAAGCACAACTCAGTAATAATGGTTCAAAGCCATCTTTGTTTAGAGCTGCCTGTTGTGCATATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGGTGGTTAATGATTGTATTGGCTTTGCGGGACCATTGCTTCTCAATAAGCTGATCCGGTTTCTTCAACAAGGTTCAGAGAATATGGATGGGTATTTACTTGCAATATCCTTGGGTCTCACATCTATAACTAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCCAAGCTGAAGCTAAAGCTGCGGTCTAGTATCATGACTCTAATCTATCAGAAGTGTCTATGCGTGAACCTAGCGGAGCGTTCAAGATTCTCTAATGGAGAAATTCAGACATTTATGTCTGTAGATGCTGACCGAACTGTCAACTTGTGTAATAGTTTTCATGATATGTGGAGCTTGCCTTTACAAATTGGAGTGGCGCTATATCTTTTGTATACTCAAGTCAAATTTGCGTTTGTCTCTGGAATAGCAATAACCATTTTGTTGATACCAGTGAATAAATGGATATCGAAATTGATTGCAAGTGCTACTGAGAAAATGATGAAGCAGAAGGATGAAAGGATACGGAGGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGCATGGGTGGGAACTTCTTTTTTCTGGTTGGTTGATGGAGACAAGATCTTCTGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGACGCATGGTGTGTATTCTTTTGGGCTACGACACCAACTCTTTTTTCTCTTTTCACATTCGGACTCTATGCATTGATGGGACACCAACTTGATGCTGCTATGGTTTTCACTTGCCTGGCCTTGTTTAACTCACTAATTTCACCACTGAATTCATTCCCTTGGGTGATTAATGGATTGATTGATGCCATTATATCCTCCAGACGGTTGAGTAGGTTTCTGTCTTGCCCTGAAAGTAAATCTAAGATGAAAGAGACCTATTCATGTTCATCATTGTTCCTGAGTAAACAGGCTGATTCTTTACAAGGCCTAGCTGTCTTTGTCCAAGATGCATGTTGTACTTGGTCAAGCAATGATGAAGAAGCATCAAACTTGGTGTTGAATCACGTGAATCTAAGTCTGTCAAGGGGTTCCTTTGTTGCAGTAGTAGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCACTTCTTGGAGAAATGCAGCTTGCTCATGGATCAATTTGTTCTGATGGATCAGTGGCATTTGTACCACAGGTCCCATGGATTTTGTCTGGAACAATACGTGACAACATATTATTTGGGAAAATCTATGATCCCAAAAGGTATGCAGATACTGTGCAGGCATGTGCACTAGATGTTGATATCTCATTGATGGTCGGAGGTGACATGGCTTATATTGGGGAAAAAGGAGTCAACTTGTCAGGTGGACAAAGAACTCGTCTTGCTTTGGCAAGGGCATTGTATCATGGCTCCGATGTAATTATGCTTGATGATGTCCTGAGTGCTGTTGATGCACAAGTTGCTCGATGGATCTTACACAATGCAATTCTAGGTTCTCTTATGCAGGGAAAAACTCGAATACTGTGTACCCATAATATTCAGGCAATATTTTCTGCTGATTTGGTTGTTATAATGGACAAAGGACATGTAAAGTGGGTGGGAAGTCCAACTGACTTCCCAGTTTCTTCATATATAACATTCTCCCCATTGAATGAACTCGATTCAGATTTCCAGAATCAAGGAAAATCTTGCAGCCCTAATTCTTCCAAATTAAAAGAGCTTCAAGATAGAGATATTATCAATGATCTGGAGGGAGCAGAGGAGATCATTGAAGTTGAGTTGAGGAAAGAGGGCAAAGTGGAACTTGGAGTTTATAAGAACTATGCTATGTTCACTGGCTGGTTCATTACAGTTGTAATATGCCTGTCAGCTATTCTGATGCAAGCTAGTCGTAATGGAAATGATTTATGGTTGTCATATTGGGTTGATACAACAGAAAACAGACAAACAAAATACTCTGTGTCCTTCTATCTGGCTATACTATGTCTCTTTAGTATCATAAATTCTTTTTTCACGTTGGTGAGGGCGTTCTCTTTTGCATTTGGTGGCTTACAAGGAGCAACTAAAGTTCACAATAAAATGCTCAGTAAGCTAATCAATGCACCTGTGCAATTCTTTGATCAGACCCCTGGTGGAAGAATACTAAATAGGTTTTCGTCTGATATTTATATCATTGATGATTCTCTTCCATTCATCATGAACATTCTCCTAGCTAATTTTGTAGGACTGTTGGGTATTGCAATAGTTTTGTCATATGTTCAGGTCTTTTTCTTAGTCTTGCTATTGCCATTTTGGTATATCTACAGTAGACTCCAGTTCTTCTACAGGTCAACATCAAGAGAACTACGACGACTAGATAGTGTTTCTCGTTCTCCAATATATACATCTTTCACCGAAACACTCGATGGATCATCAACTATTAGGGCATTTAAATCTGAGGACTTATTTTTTACCAAATTCACTGAACATGTAACATTGTATCAGAAGACTTCCTACACGGAGATAGCAGCTAGTTTATGGCTTTCCTTGCGTCTTCAATTATTAGCTGCATTTATCATCGCATTTATTGCCTTGATGGCGGTGGTTGGATCTCATGGCGGTCTGCCTATCAACTTTGGTACCCCTGGACTGGTAGGATTGGCACTCTCATATGCAGCTCCAATTGTGTCCTTGATGGGAAGCTTTTTAAGTAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGCCCTTCAATATATGGAGATTCCTCAAGAAGAACTAGCTGGATGCTTAAACTTGAACCCAGATTGGCCAAATCAAGGAGCAATTGAGTTCTGCAATGTTACTTTGAAATATAGGCCATCTATGCCAGCTGCACTACGCAATCTTAGTTTTACAATTGCTGGTGGGATGCAGATAGGAATTATTGGAAGAACAGGTGCAGGAAAGTCTAGTGTGTTAAATGCCCTGTTCCGCCTTACCCCAATATGTACAGGCTCCATTCTCATTGATGGCATAAACATTAAATATATTCCTGTCAGAGAACTACGTGCTCATTTGGCCGTTGTTCCTCAGAGTCCATTCCTTTTCGAAGGATCACTAAGGGATAATCTAGATCCATTCAAAATGAATGATGACATAAAAATTTGGAATACTTTGGAGAAGTGCCATGTGAAAGAAGAAGTAGAAGCAGCCGGCGGGCTAGATATTCTCATAAAGGAATCTGGGATGTCATTTTCTGTTGGCCAACGGCAGCTTCTTTGCCTTGCACGTGCTCTTCTCAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAACGTAGACACTCAAACTGCTTCACTGCTGCAAAGTACCATATCTAGTGAATGCAGAGGCACAACAGTCGTCACAATCGCTCACCGGATTTCGACAGTTTTGAATATGGACAACATTTTAATTCTTGACCATGGGAATCTGGCTGAACAAGGAGACCCCGAGGTTCTTCTGAAAGATGACTCCTCCATATTTTCAAGTTTTGCTAAAGCTTCATCAATATGGCGGATATTCCAAGACTTTCATACCCCATTTATCTTTCTTCGGTTCTTTCAATACCCAGAAGCCATATTCTCATTTTCCTCCTATGTTATGCAATTTGGGGCTCTTCTAGTTCTGTTTCTTCTTTCTAACTCCTTAAATATTTAA 5943 0.4077 MMNGCQKSSNISGQSYDSLYVNPLTELRHSRSCSDYGRSACKGDDFEDFTHRDRKILWDNKENATPIKKEIEVLGDKENAVPINGSSTVPKKFSNSRSLSTDRILKPSSLQFCMQMNDPEKAFGSKIWDRNESENSSSLNVWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVREATPEGLSGGTLFSLYTYEGQGRQNRKLAVAYHKRRNGRSHFTIAQNVKGLLSNLDDSFLGTVMANLMGSKYRIWDQGYRHNSRGKQPKPPLAVVKFIPTIATCAGSYRSMRAYVPKHQSMSLKSTSQVQHIKGLPIDWEGKLDKVHQLFSRVPLYNKISKQLELDFRDKGRAGLRIQTSVKNFQLTLEENGRQTILQLGRVAKSKFVMDYRYPLTGYQAFCICLASIDTKLCCSVLVLAEVAAIPASGNQAEVKLRNFFYELCKWNFHMRKAINFQCKQFRSKVNSAFKSQPDRVWDGKRFSECFEDIYPYCFSDFGFGLNVVTIVIIVVLGFTQKSSRGIQRADAQITLSEKFVLHFVPAVGACLSFLDIIFLWKRELNRHFVGYHKWFYSCSELIVWTNIIRFSKCARSQYIFCNYVLCYWWILKPIFWIFHLLTKFPSLEIPILIMESSIVLLNITFGIAINVIRVKRSSSKSSLLEDPLLSNDMDPEEGCHCGLENTGRFWNLMTFNLITPVMNHGMVKQLDSEDLLQLPPDMDPSSCHDIILTCWQAQLSNNGSKPSLFRAACCAYGWPYLRLGLLKVVNDCIGFAGPLLLNKLIRFLQQGSENMDGYLLAISLGLTSITKSFLDTQYTFHLSKLKLKLRSSIMTLIYQKCLCVNLAERSRFSNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGIAITILLIPVNKWISKLIASATEKMMKQKDERIRRTGELLTYIRTLKMHGWELLFSGWLMETRSSEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAIISSRRLSRFLSCPESKSKMKETYSCSSLFLSKQADSLQGLAVFVQDACCTWSSNDEEASNLVLNHVNLSLSRGSFVAVVGEVGSGKSSLLYSLLGEMQLAHGSICSDGSVAFVPQVPWILSGTIRDNILFGKIYDPKRYADTVQACALDVDISLMVGGDMAYIGEKGVNLSGGQRTRLALARALYHGSDVIMLDDVLSAVDAQVARWILHNAILGSLMQGKTRILCTHNIQAIFSADLVVIMDKGHVKWVGSPTDFPVSSYITFSPLNELDSDFQNQGKSCSPNSSKLKELQDRDIINDLEGAEEIIEVELRKEGKVELGVYKNYAMFTGWFITVVICLSAILMQASRNGNDLWLSYWVDTTENRQTKYSVSFYLAILCLFSIINSFFTLVRAFSFAFGGLQGATKVHNKMLSKLINAPVQFFDQTPGGRILNRFSSDIYIIDDSLPFIMNILLANFVGLLGIAIVLSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDLFFTKFTEHVTLYQKTSYTEIAASLWLSLRLQLLAAFIIAFIALMAVVGSHGGLPINFGTPGLVGLALSYAAPIVSLMGSFLSSFTETEKEMVSVERALQYMEIPQEELAGCLNLNPDWPNQGAIEFCNVTLKYRPSMPAALRNLSFTIAGGMQIGIIGRTGAGKSSVLNALFRLTPICTGSILIDGINIKYIPVRELRAHLAVVPQSPFLFEGSLRDNLDPFKMNDDIKIWNTLEKCHVKEEVEAAGGLDILIKESGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDTQTASLLQSTISSECRGTTVVTIAHRISTVLNMDNILILDHGNLAEQGDPEVLLKDDSSIFSSFAKASSIWRIFQDFHTPFIFLRFFQYPEAIFSFSSYVMQFGALLVLFLLSNSLNI 1980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0125 1980 ProSitePatterns ABC transporters family signature. 1831 1845 IPR017871 GO:0005524|GO:0016887
Glsi07g0125 1980 CDD ABCC_MRP_domain1 1083 1284 - -
Glsi07g0125 1980 Gene3D ABC transporter type 1, transmembrane domain 750 1053 IPR036640 GO:0005524|GO:0016020
Glsi07g0125 1980 Pfam ABC transporter transmembrane region 761 1025 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi07g0125 1980 Pfam ABC transporter transmembrane region 1375 1625 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi07g0125 1980 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1695 1928 IPR003439 GO:0005524
Glsi07g0125 1980 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 762 1037 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi07g0125 1980 Gene3D Tubby Protein; Chain A 160 410 IPR025659 -
Glsi07g0125 1980 SMART AAA_5 1111 1285 IPR003593 GO:0016887
Glsi07g0125 1980 SMART AAA_5 1721 1905 IPR003593 GO:0016887
Glsi07g0125 1980 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1081 1308 IPR003439 GO:0005524
Glsi07g0125 1980 ProSitePatterns ABC transporters family signature. 1209 1223 IPR017871 GO:0005524|GO:0016887
Glsi07g0125 1980 Gene3D - 1070 1310 IPR027417 -
Glsi07g0125 1980 CDD ABC_6TM_MRP7_D1_like 760 1045 - -
Glsi07g0125 1980 CDD ABCC_MRP_domain2 1693 1912 - -
Glsi07g0125 1980 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Glsi07g0125 1980 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Glsi07g0125 1980 PRINTS Tubby superfamily signature 240 264 IPR000007 -
Glsi07g0125 1980 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Glsi07g0125 1980 CDD ABC_6TM_MRP7_D2_like 1373 1672 - -
Glsi07g0125 1980 Pfam Tub family 166 411 IPR000007 -
Glsi07g0125 1980 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1374 1660 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi07g0125 1980 FunFam Multidrug resistance-associated protein ABC domain protein 736 1054 - -
Glsi07g0125 1980 Pfam ABC transporter 1102 1234 IPR003439 GO:0005524
Glsi07g0125 1980 FunFam ABC transporter C family member 13 1063 1317 - -
Glsi07g0125 1980 SUPERFAMILY ABC transporter transmembrane region 1370 1677 IPR036640 GO:0005524|GO:0016020
Glsi07g0125 1980 Gene3D - 1681 1928 IPR027417 -
Glsi07g0125 1980 FunFam ABC transporter C family member 5 1338 1678 - -
Glsi07g0125 1980 Pfam ABC transporter 1712 1859 IPR003439 GO:0005524
Glsi07g0125 1980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1093 1295 IPR027417 -
Glsi07g0125 1980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1688 1920 IPR027417 -
Glsi07g0125 1980 Gene3D ABC transporter type 1, transmembrane domain 1340 1678 IPR036640 GO:0005524|GO:0016020
Glsi07g0125 1980 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 683 1929 - -
Glsi07g0125 1980 FunFam ATP-binding cassette (ABC) transporter, putative 1682 1929 - -
Glsi07g0125 1980 SUPERFAMILY Tubby C-terminal domain-like 152 415 IPR025659 -
Glsi07g0125 1980 SUPERFAMILY ABC transporter transmembrane region 745 1045 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0125 Glsi-ChrGlsi07 740411 763387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0125 59 310 TUB Transcription Factor Family AT1G16070 54.231 1.57e-84 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi07g0125 ABC_membrane 3.4e-38 CL0241