Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0103 ATGGATAGCCAAACGGAGAAGAAACAGACAGAAACGGAGGATCAAAAACACCTACATGGTTCACCTCCTGGTCTTCTGTTGGATCTAAGTCTCTCTAGTAAGGATTCAGGTGATGATTCAAAGCCAGAACTCAATCTCATCAACTGTTTCGATACGAATTCATCCATGAAGTCCTCTGAATCTCCTCATGGTAATGAGTTGGATCCACGGATTTTCTCATGCAACTACTGCCAGAGGAAATTTTATAGCTCGCAGGCACTTGGGGGACACCAAAATGCACACAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAGAGTTGGTGCTGCAGTTTCACCAGATTTTGGACAGAGGTACTCTAGTATGGCTTCTCTACCTTTGCATGGCTCCTATAACAGATCACTTGGCATTCAGGTTCATTCCATGATCAACAAGCCCTCTTATGAATCACCCTTCTTTGGTTTGTCTCGTTCACATGGCCAAACTGGATGGCGAAGAATTCAGAAGCTTCCATTGGGGAATTTTCATGTTGGGGCAGGCACTGAATCATCTTTAGCTGCAAAATTTTCTCCAAGGTCTGTGACAGAGGGAATTGAAGGCTACTGGCTGGGTAGTGTTACCCATTTGAATAATAAACAAGAGGAGTTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA 678 0.4395 MDSQTEKKQTETEDQKHLHGSPPGLLLDLSLSSKDSGDDSKPELNLINCFDTNSSMKSSESPHGNELDPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHRVGAAVSPDFGQRYSSMASLPLHGSYNRSLGIQVHSMINKPSYESPFFGLSRSHGQTGWRRIQKLPLGNFHVGAGTESSLAAKFSPRSVTEGIEGYWLGSVTHLNNKQEELQKLDLSLKL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0103 225 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
Glsi07g0103 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Glsi07g0103 225 MobiDBLite consensus disorder prediction 1 43 - -
Glsi07g0103 225 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Glsi07g0103 225 Gene3D Classic Zinc Finger 51 114 - -
Glsi07g0103 225 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 225 IPR044246 GO:0009788
Glsi07g0103 225 MobiDBLite consensus disorder prediction 1 18 - -
Glsi07g0103 225 FunFam Zinc finger protein 2 50 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0103 Glsi-ChrGlsi07 624768 625445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0103 27 225 C2H2 Transcription Factor Family AT1G80730 44.000 2.44e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi07g0103 None None None