Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0101 ATGTCAGGTTCCTTGCGTGTGAATGTCGGAGGATCTCTATGTGATTTCTTCAACATGTTTGGCAGTGGTTACAAGTCAAAGTACATTGGTGGCAATAGAGATAAATTTGTAAGGTTGGAGGATCTGGATTCAAATTTGTCAATGCAATCAAGCACCGGCAGTGGAATGAAGAAGCAGAGGTTTAATATAGAGGGCATGCCTATTCCTGGTCGTAATATGCAAAATGCATCAAAATCCTTTAGGCTAGGAATGAAGAGGGGATCAGATGGACTGAGGACATTTGGGAGATCACTGAAAAGCGGAGTAACCTGGGGAGTGTTCCCAGAAGATCTTAGAGTGTCAGAGACTAAAGTATTTGATCCTCAAGACAAGGCTCTTCTGCTGTGGAACAAGATTTTTGAGCTTCTATGTATTATATCGATATCTTGTGATCCCCTTTTCTTTTATCTTCCTTATTTCAATCACAGATCATATTGCCTGGCCATGGATAATGACCTCGCCTCTACTGCTGTTTGGCTGAGATCAATACTTGATTCAGTCTATCTCATTCGCATCCTTTTCCAATTTCGTACTGCTTATATTGCACCTTCTTCTCGGGTATTCGGTCGAGGTGAACTTGTCATAGATCCTGCACAGATTGCCAAGAGATATCTACGACGTTACTTCATTGTTGACTTCATTTCTGTGCTGCCTTTGCCACAGATTATTGTGGCGAGATATCTTAGCAAAGGAAAAGGTTTAGAGGTATTGGCCACGAAAACGGCACTGTTGAGAGTGGTCATCCTCCAATATTTTCCAAGATTTGTACGATTTATACCTTTAGCTTCAGAAATTAAAAAGACATCTGCTGTTTTTTCTGATAATGCACTGGTGGGTGCCACATACTATTTGATGTGGTATATGCTTGCTAGTCATATAACGGGGTCTGTCTGGTACTTACTAGCCATAGAACGTAATGACACGTGCTGGCAGGAAGCTTGCAGTGGAGTTGAAGAATGTGTCACACAATTCTTGTACTGTGAGGGTTCAAACAGGCGTCTTCCGGGGTTTAGTAAATGGAGAAGTGTCAGCAAGAGTGTTCTTGAAGAAAACTGCTCTGTCAAAGATGATCAATCAAAGTTTGAATATGGAATCTACACTCGAGCTATAGAAAAAGAAGTTGTTGCGTCCAGTGATGTCTGGACTAAATTCTGTTTCTGTTTATGGTGGGGCCTGCAAAATGTTAGTACACTTGGGCAGGGGCTTGAAACTAGTACTTACCCTGGAGAGGCTTTGTTTTCCATACTAATATGTATTTCGGGGCTTGTCCTTATTGCTCTTCTGATTGGAAAAATGCAGACGTACCTTCAATCAATTACCGTTCGTCTTGAGGAAATGAGGATCAAAAGGCGTGACTCTGAGCAGTGGATGCATCATCGATTGCTTCCTCCAGATCTAAGGGAAAAAGTCAGACGCTATGACCAATACAAATGGCTCGAAACTCGAGGAGTAGATGAAGAGAGTTTGGTTCAAAGTCTTCCAAAAGATCTAAGGAGAGATATCAAACGGCATCTTTGCTTGAATTTGGTCAGAAGGGTTCCTCTCTTCGCTAACATGGACGAACGCTTGCTTGATGCTATATGTGAGCGTTTGAAGCCTAGTTTGTACACAGAGGGCACATACATTGTTAGGGAAGGAGACCCAGTTGATGAGATGCTCTTCATCATACGGGGTCGTTTAGAGAGTGTTACCACAGATGGTGGAAGAAGTGGATTTTTCAACAGGGGTCTTCTCAAAGAAGGTGACTTTTGTGGAGAAGAGCTACTAACATGGGCATTGGACCCTAAATCTGCTGCTAATTTGCCATCATCTACTCGGACAGTGAAGGCCATCAATGAGGTGGAGGCATTTGCCTTGGAAGCAGAGATGTTGAAATTTGTGGCTTCCCAGTTCAGGCGCCTTCATAGTAGACAGGTTCAGCAGACCTTCCGTTTCTACTCGCAGCAATGGAGAACATGGGCTGCAACTTTCATTCAGGCTGCGTGGCGGCGCTATTCCAAGAGGAAAATTGCGGAGAAACACCAAATGGAGGAAGCGGAAGACTATGGTTCTGATGATGATGGAAGAGCCTTGATTATGCATAGTGAAAGTTCATCTAGCCATGGACTTGGTTCAGCCATCTATGCTTCCCGCTTTGCCGCTAAAGCACTTCGTGGTCATAGGCTTCGCTCACTCCAAAAGCCCCCGGAACCTGATTTCAGTGCTTACGATGCACAGTGA 2259 0.4365 MSGSLRVNVGGSLCDFFNMFGSGYKSKYIGGNRDKFVRLEDLDSNLSMQSSTGSGMKKQRFNIEGMPIPGRNMQNASKSFRLGMKRGSDGLRTFGRSLKSGVTWGVFPEDLRVSETKVFDPQDKALLLWNKIFELLCIISISCDPLFFYLPYFNHRSYCLAMDNDLASTAVWLRSILDSVYLIRILFQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIVDFISVLPLPQIIVARYLSKGKGLEVLATKTALLRVVILQYFPRFVRFIPLASEIKKTSAVFSDNALVGATYYLMWYMLASHITGSVWYLLAIERNDTCWQEACSGVEECVTQFLYCEGSNRRLPGFSKWRSVSKSVLEENCSVKDDQSKFEYGIYTRAIEKEVVASSDVWTKFCFCLWWGLQNVSTLGQGLETSTYPGEALFSILICISGLVLIALLIGKMQTYLQSITVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEMLKFVASQFRRLHSRQVQQTFRFYSQQWRTWAATFIQAAWRRYSKRKIAEKHQMEEAEDYGSDDDGRALIMHSESSSSHGLGSAIYASRFAAKALRGHRLRSLQKPPEPDFSAYDAQ 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0101 752 ProSiteProfiles IQ motif profile. 664 693 IPR000048 GO:0005515
Glsi07g0101 752 Gene3D Jelly Rolls 526 646 IPR014710 -
Glsi07g0101 752 FunFam Cyclic nucleotide-gated ion channel 1 526 644 - -
Glsi07g0101 752 CDD CAP_ED 528 659 IPR000595 -
Glsi07g0101 752 ProSiteProfiles cAMP/cGMP binding motif profile. 528 611 IPR000595 -
Glsi07g0101 752 Gene3D Helix hairpin bin 456 519 - -
Glsi07g0101 752 SUPERFAMILY cAMP-binding domain-like 458 648 IPR018490 -
Glsi07g0101 752 SMART cnmp_10 528 659 IPR000595 -
Glsi07g0101 752 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 110 746 - -
Glsi07g0101 752 Gene3D - 131 454 - -
Glsi07g0101 752 SUPERFAMILY Voltage-gated potassium channels 121 450 - -
Glsi07g0101 752 FunFam Cyclic nucleotide-gated ion channel 1 455 519 - -
Glsi07g0101 752 Pfam Cyclic nucleotide-binding domain 549 637 IPR000595 -
Glsi07g0101 752 Pfam Ion transport protein 128 455 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0101 Glsi-ChrGlsi07 608284 612782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0101 24 748 Ion Channels AT1G15990 67.333 0.0 994