Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0086 ATGATTGTAGATTTTCATTTCCAGTTTAAAGTTGATCATAATGTGCGGGATGTACATTCAGGCCATTTGATCTGTAGACCGTTGCCTATAGATATTGGAAGGTGTACACGTGTCATTGTGAAGGAAGCAAAACCAGAAGGACTATCTGGGGCCACTATGTTTTCTCTTCGTACCTATGTCAGGACGGCAGAATCGGAAACTAGCAGTAGCTCATCACAAGAGGCGGCATGGGAGGTCTCTGTTCATCATAGCTCAAAATACAAAAGTCTATTGTCCAATTCAGACGATGGTTTTCTTGGGACTGTAACAGCTAACCTCATGGGTTCAAAGTCTCAAATTTGGTTTATACCTACAGCAGCAACATGTACAGGAAGTTACAGAGGCATGGGAGTATATATACCCAAGCATCAATCTATGTCAGTGAAGAACACGACCCAGATTGCAAGGCAATTTGAACTTGACTTTAGAGATAAAGGAAGGGCAGGACTTAGAATCCAAAGATCGGAGAATGGAAGGCAGACGTTCCTGCAGCTAGGTAGAGTGGAGAAATCAAAGTTCGTTATGGACTACAGATATCCTTTGACAGGTTACAAGGCGTTTTGCTTATGTTTAGCTTTCATTGATACAAAGCTTTGTTGCACCGTGTAG 648 0.4213 MIVDFHFQFKVDHNVRDVHSGHLICRPLPIDIGRCTRVIVKEAKPEGLSGATMFSLRTYVRTAESETSSSSSQEAAWEVSVHHSSKYKSLLSNSDDGFLGTVTANLMGSKSQIWFIPTAATCTGSYRGMGVYIPKHQSMSVKNTTQIARQFELDFRDKGRAGLRIQRSENGRQTFLQLGRVEKSKFVMDYRYPLTGYKAFCLCLAFIDTKLCCTV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0086 215 Gene3D Tubby Protein; Chain A 132 214 IPR025659 -
Glsi07g0086 215 PANTHER TUBBY-RELATED 140 212 - -
Glsi07g0086 215 SUPERFAMILY Tubby C-terminal domain-like 22 214 IPR025659 -
Glsi07g0086 215 Pfam Tub family 138 209 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0086 Glsi-ChrGlsi07 536316 538849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0086 23 147 TUB Transcription Factor Family AT1G16070 36.184 9.30e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi07g0086 Tub 7.1e-13 CL0395