Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0076 ATGGCTCAAGACTCGGCCTTGGATGATTTTTATTTCTCAGCTTTGTTGGATGAAGAACAAGAGGATATTGTCCCCGTTTCTGATGACAACTATGCTCAACGCTTGCAGTTTCAGGAGACTCTGATGGCCTCCGTTATCACTTCTCAGATGGGGAACATTGCCTTATCCCCAATACTCTGCTCAAAACCATCTTCGTCGTCTTCATCTTCTGCAACAGTGATCGAAATTAGCCCAGCCCCTGAAACACGGCAGGTGAAGTCCCCAGATGAGGCGGCAGCGAAATCCTCGCAACTCATCTGTGAAATTTGCTCAGAAGTCAAAGGGAGTGCCCAGATGTTCACAAATCAGAGATGCGATCATTCCTTCTGCTCTGATTGTGTAATCAAACAAGTGGCAACAAAGATCCAAGAAAGCATAACAGTGGTTTCATGCCCTGGTTTGGACTGCAAGGGTGTTCTTGAGCTCGATGCTTGTCGCCCACTGCTTCCTAAGGACCTGCTTGATAGGTGGGAGCAGACCCTATGTGAAGCTCTGTTTCTTGCGGCCCCAAAACTTTATTGCCCGTTTAAGGATTGTTCAGCGATGTTGCTGGCTGACGATGAGGGAGAAGAAGCCATAACGGAGACCGAGTGCCCTGGTTGCCATAGACTGTTCTGTGCAAGGTGTTATGTCCCTTGGCATCCTGGGGTTGAATGTGAGGAATTCCAGAGACTGAATGAGCATGAGAGAAGGAGGGAAGATCTTCTTGCGATGGAGCTTGCTAAAGAAAAGAAATGGAGTAGGTGTCCCCAGTGCAAGTGGTATGTGGAAAAGATAGATGGGTGTTTGCATATCACTTGCAGGTGCCAATATCAATTTTGCTATGGTTGTGGAGAACAATGGACAGAGACTCATGGTGGATGCCAAAGAATTTAG 915 0.4732 MAQDSALDDFYFSALLDEEQEDIVPVSDDNYAQRLQFQETLMASVITSQMGNIALSPILCSKPSSSSSSSATVIEISPAPETRQVKSPDEAAAKSSQLICEICSEVKGSAQMFTNQRCDHSFCSDCVIKQVATKIQESITVVSCPGLDCKGVLELDACRPLLPKDLLDRWEQTLCEALFLAAPKLYCPFKDCSAMLLADDEGEEAITETECPGCHRLFCARCYVPWHPGVECEEFQRLNEHERRREDLLAMELAKEKKWSRCPQCKWYVEKIDGCLHITCRCQYQFCYGCGEQWTETHGGCQRI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0076 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 178 IPR013083 -
Glsi07g0076 304 Gene3D - 185 233 - -
Glsi07g0076 304 SUPERFAMILY RING/U-box 95 177 - -
Glsi07g0076 304 CDD Rcat_RBR_unk 258 294 - -
Glsi07g0076 304 FunFam RBR-type E3 ubiquitin transferase 234 304 - -
Glsi07g0076 304 ProSiteProfiles TRIAD supradomain profile. 96 304 IPR044066 -
Glsi07g0076 304 Gene3D - 234 304 - -
Glsi07g0076 304 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 294 IPR031127 GO:0004842|GO:0016567
Glsi07g0076 304 FunFam RBR-type E3 ubiquitin transferase 95 181 - -
Glsi07g0076 304 SUPERFAMILY RING/U-box 243 301 - -
Glsi07g0076 304 CDD BRcat_RBR_unk 181 235 - -
Glsi07g0076 304 SUPERFAMILY RING/U-box 173 237 - -
Glsi07g0076 304 SMART ibrneu5 242 301 IPR002867 GO:0008270
Glsi07g0076 304 SMART ibrneu5 168 232 IPR002867 GO:0008270
Glsi07g0076 304 ProSiteProfiles Zinc finger RING-type profile. 100 145 IPR001841 -
Glsi07g0076 304 Pfam IBR domain, a half RING-finger domain 251 301 IPR002867 GO:0008270
Glsi07g0076 304 Pfam IBR domain, a half RING-finger domain 182 232 IPR002867 GO:0008270
Glsi07g0076 304 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0076 Glsi-ChrGlsi07 485019 486027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0076 100 291 C3H Transcription Factor Family AT2G19610 28.358 4.88e-20 87.8