Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0075 ATGGCTCAAGTTTCTACCTCTGATCTTCTCCGCGTTGATGATTTTTATTTCTCCGCCTTGTTTGACGAAGAACAAGAGGAGATTGACGAAGAACAAGAGGATGTTGCCCCCATTTCTGATGACAAATATGCTGAACAATTGCAGTTTCAGGAGACCCTGATGGCCTCCATTATCACTTCTCAGATGGTGAACATTGCCTCATCCCCAATCCTCTCCTTAAAACCATCTTCGTCGTCTTCATCTTCTGCAACACTGGTTCAAATTGGCGCTGTTCCTGAAACACAGCAGGTGAAGTCCCTAGACGAGGAAGCTGAATCCTCGCAAATCATCTGTGAAATCTGCGCAGAAATCAAAGGGAGTGACCAGATGTTCACAAATCGGAGATGTGACCATTCCTTCTGCTCTGACTGTGTAACCAAACAAGTGGCCACGAAGGTCCAAGAGAGCATAACAGTGGTCTCCTGCCCTGGTTTGGCCTGCAAGGGTATTCTTGAGCTCGATGATTGTCGCCTATTGCTTCCAAAAGAGTTGCTTGATAGGTGGGATCAGGCCTTGTGTGAAGCTTTGTTTCTGGCAGCCCCAAAATTTTATTGCCCTTTCAGGGATTGTGCAGCCATGTTGCTGGTAGACAATGAGGAAGAAGAAGCCATAAGGGAGTCTGAGTGTCCTGTTTGCCACAGATTATTCTGTGCAAGGTGTTATGTCCCTTGGCATCCTGGGGTCGAATGTCAGGAATTCCAGAGTCTGAATGAGCATGAGAGAGGAAGGGAGGACCTTCTTGTGAGAGAGCTTGCTAAGGAAAAGAACTGGAGAAGGTGTCCCCGGTGTAATTTTTATGTGGAAAAGACAGAAGGGTGTTTACATATCACTTGCAGGTGCCAATTTGAGTTTTGTTACGGTTGTGGAGAACAATGGATTTCTACCCACGGTGGCTGCCAAAGAAATTAG 948 0.4641 MAQVSTSDLLRVDDFYFSALFDEEQEEIDEEQEDVAPISDDKYAEQLQFQETLMASIITSQMVNIASSPILSLKPSSSSSSSATLVQIGAVPETQQVKSLDEEAESSQIICEICAEIKGSDQMFTNRRCDHSFCSDCVTKQVATKVQESITVVSCPGLACKGILELDDCRLLLPKELLDRWDQALCEALFLAAPKFYCPFRDCAAMLLVDNEEEEAIRESECPVCHRLFCARCYVPWHPGVECQEFQSLNEHERGREDLLVRELAKEKNWRRCPRCNFYVEKTEGCLHITCRCQFEFCYGCGEQWISTHGGCQRN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0075 315 ProSiteProfiles TRIAD supradomain profile. 107 315 IPR044066 -
Glsi07g0075 315 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 52 304 IPR031127 GO:0004842|GO:0016567
Glsi07g0075 315 CDD Rcat_RBR_unk 269 305 - -
Glsi07g0075 315 SUPERFAMILY RING/U-box 184 247 - -
Glsi07g0075 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 189 IPR013083 -
Glsi07g0075 315 ProSiteProfiles Zinc finger RING-type profile. 111 156 IPR001841 -
Glsi07g0075 315 SUPERFAMILY RING/U-box 106 188 - -
Glsi07g0075 315 SMART ibrneu5 253 312 IPR002867 GO:0008270
Glsi07g0075 315 SMART ibrneu5 179 243 IPR002867 GO:0008270
Glsi07g0075 315 CDD BRcat_RBR_unk 192 246 - -
Glsi07g0075 315 FunFam RBR-type E3 ubiquitin transferase 245 315 - -
Glsi07g0075 315 Pfam IBR domain, a half RING-finger domain 195 243 IPR002867 GO:0008270
Glsi07g0075 315 Pfam IBR domain, a half RING-finger domain 262 312 IPR002867 GO:0008270
Glsi07g0075 315 Gene3D - 240 315 - -
Glsi07g0075 315 SUPERFAMILY RING/U-box 254 313 - -
Glsi07g0075 315 FunFam RBR-type E3 ubiquitin transferase 106 192 - -
Glsi07g0075 315 ProSitePatterns Zinc finger RING-type signature. 129 138 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0075 Glsi-ChrGlsi07 481658 482683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0075 101 302 C3H Transcription Factor Family AT2G19610 26.190 1.38e-18 84.0