Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0062 ATGAAACTCCTATTATTGATCCTAAGCTTCTCTGCCCGCTTCTGTGTTGCTTCTGCTTTGAGCTCCGATGGGTTGACTCTGTTGTCACTCTTGAAGCACTGGACTTTTGTGCCTCCTCCCATAAATTCAAGCTGGAAGGCCACTGATTCTACCCCATGCTCATGGGTAGGAGTACTTTGTGATCATAACAGCAATGCGATCTCCCTTAACCTCACCGCTTCTGGGATTAATGGTCAACTCGGACCAGAAATTGAACATTTGAATCACTTGCAGACCATTGTGCTATCGGCTAATGGTTTCTCAGGAATAATACCCCCAGAGTTAGGCAATTGTAGTCTGCTTCGGTATATCGACCTTTCTGAAAACCACTTTACCGGCCAAATACCATGTACCTTGAAAAAATTGCAAATTTTGCAACGTATAAGGTTTTCTTCTAATCTGCTAACTGGTGAAATTCCCGAGTCCTTGTTTCAAATTCCTCATCTTGAAGAGGTGTACCTGTACAACAACAGTCTAAGTGGTCCAATCCCCTCCAATATTGGAAACACGACTCAACTATCGAAGTTATATCTATCTAGGAATCAGTTGTCGGGGACCATTCCTCCTTCCATAGGTAAATGCAGTAAATTAGAGGCATTGTTTTTGAACGAGAACAGATTGAAGGGAATTCTGCCGCGGAGTCTCAACAATCTCAAGAATCTTGTTTATTTAGATGTCAGAAATAATAATCTTGGAGGTACCATAGGTTTTGGTTCTGACAATTGTGGAAAGTTATTCATTTTGGATCTGTCATTCAATAGATTTAGTGGAGGTATTCCCTCAGGCTTGGGGAATTGTACGAGTTTGGCAGAATTTGCTGCCGTGAACAGCAACTTAGCAGGCAGCATTCCATCATCCTTAGGATTACTACGTGAGCTTTCTATTCTTCGGCTTCCTGAGAACCACTTGTCTGGAAAAATACCTCCAGAAATTGGTAACTGCAAATCTTTGAGAAAGTTACATTTATATTCCAATCAACTGGAGGGAAAAATTCCGTATGAATTGGGAAGGCTAGGTAAATTACAGGACCTTGAATTGTATTTCAACCATTTGACTGGTGAAATTCCACTTAGCATTTGGAAGATTCAAAGTCTTAAGCATATCCTTGTTCATAATAATAGCCTTTTTGGAGAATTACCTGTTGAGCTGACAAAGCTCAAGCATCTTAAAAATATCTCATTGTCGGACAACCAGTTCTCTGGAGCCATACCTCAAAGCCTCGGAATCAATAGCAGTTTGGTGAAGTTGGACTTGATGAATAATAAGTTCACTGGTAGCATCCCACCAAATCTTTGTTCTGGGAAGCAACTACGTGTACTGAATATAGGTCTTAATCAACTCGAAGGGGGCATTCCTCATGATGTAGGAAGATGTGCAACTCTAAGGTGGTTGATTCTGAAAGCAAATACTCTTACTGGGTCACTCCCTGATTTTGAAAGTAATCAAAATCTCAAATACATGGATATCAGCAAGAACAACATCAGTGGTGCAATTCCATCAAGTTTGGAAAACTGCACAAATCTCACTGAAATTAATTTGTCAATGAACAAATTAACTGGCCTTATCCCCTCAGAGCTAGGAAATCTTGTAAATCTTTGGATTTTGAACTTTTCTCACAACAACTTGGAAGGTCCTTTGCCACCTCAGCTGTCAAACTGTAGCAAAATGGATCATTTTGATGTGGGATTCAATTACCTAAATGGTTCATTTCCGTCAAGTTTGAGGATCTGGACTAGGATAACTACATTAATTTTAAGAGAGAATCATTTTACTGGGGGTATTCCAGATTTCTTGGCAGAATTTGACAAGCTTCTTGAGCTACAACTTGGTGGAAATTTGTTCGGAGGGGAAATTCCTAGCTCACTTGGAGCATTGCAGAATCTCTTCTATGGGTTGAATCTGAGTGCTAATGGACTCACAGGTGAGGTTCCTTTAGAAATTGGGAAGCTGAAAAAGCTGCAAAGTCTGGATTTATCCCTGAACAATTTAACAGGAAGCATAAATGTTCTTGGTGAACTTTCTTCATTAGTTGAAGTCAATATTTCATACAATTCGTTTAATGGTCCTGTACCAGAAAGGCTGGTACTGAATTCTAATTTGTCATCATTCTTGGGCAATCCTGGAGTTTGTGTCAATTGTTCATCTTTAGAAGGCTTGAGTTGCACTAAAATCAGCTATTTAAAGCCATGTGACCACAAACCAACTAATCAGAAGATTCAGAACGGCCTTAGCATTGGTAAAATTGTGATAATAGAACTTGGATCCTCAATATTCCTTTTCCTAATGCTGCCAGCACTGGTTTACAAGTATATGCGCTACAGATCTAAGCAGAAAGAGAAGGAAAAAGAAGCCCAATTGTCCACAGCTATTGACAGAGAGGCCCATGAAATTGTTGGCGATGAGCCATTATCATCCCTAGTCAAGCAGGTGATGAAGGCTACAGAGAACCTAAATGATAGACATGTTATTGGCAGAGGAGCTCATGGAGTTGTTTATAAAGCCCGAGTTGATCCACTATCACATGAGATTTTTGCTGTGAAGAAGGTTTTGTTTACAAGAAACAAACGGAAGGGCTTAAGCATGCAGAGAGAAATTGAAACCGTCAGGAAAATTAAGCATCGAAATCTGGTCAAGTTTGAAGGGTTCTGGATGGGAAAGGACTATGGTCTAATCTTCTACCCTTACATGGAAAATGGAAGCCTTCATGATGTTTTGCATGAAAGGAATCCACTACCTGCCTTGGAGTGGAGTGTTCGCTATAAGATAGCTGTTGGAATTGCACATGGACTGGCATATCTTCATCATGACTGTGATCCTCCCATAGTGCATCAAGATATCAAACCAAAGAACATACTTCTTGATTATGAAATGGAACCTCACATATCTGATTTTGGTGTTGCGATGCTTCTGAATCCGTCTTCTTCTCCAACGCATAAGGGATCCACATATATTGTACCAGGCACAGTTGGGTATATTGCACCAGAGAATGCATATACGATAGTGCAGAGTGGTGTGTCTGATGTATATAGTTTTGGGGTAGTTTTGCTTGAGCTAATAACCAGGAAGAAGGTATTAGACCCATCATTTCTGGAGAAAACTACATTGGTGGGATGGGTTAGATCCATTTGGAGGGAAACAAGAGATGTTGGAAAAATTATCGATCCAAGCCTTAAAAAGGAGTTATCCGATTTGGATGTACTGGATCAAGTCATTAAAGTGCTTTGGATAGCTTTGTTATGTTCTGAGAAGGATCCACGCAAGAGACCCACGATGAGAAATGTTATTAAGCTTCTTTGA 3336 0.4017 MKLLLLILSFSARFCVASALSSDGLTLLSLLKHWTFVPPPINSSWKATDSTPCSWVGVLCDHNSNAISLNLTASGINGQLGPEIEHLNHLQTIVLSANGFSGIIPPELGNCSLLRYIDLSENHFTGQIPCTLKKLQILQRIRFSSNLLTGEIPESLFQIPHLEEVYLYNNSLSGPIPSNIGNTTQLSKLYLSRNQLSGTIPPSIGKCSKLEALFLNENRLKGILPRSLNNLKNLVYLDVRNNNLGGTIGFGSDNCGKLFILDLSFNRFSGGIPSGLGNCTSLAEFAAVNSNLAGSIPSSLGLLRELSILRLPENHLSGKIPPEIGNCKSLRKLHLYSNQLEGKIPYELGRLGKLQDLELYFNHLTGEIPLSIWKIQSLKHILVHNNSLFGELPVELTKLKHLKNISLSDNQFSGAIPQSLGINSSLVKLDLMNNKFTGSIPPNLCSGKQLRVLNIGLNQLEGGIPHDVGRCATLRWLILKANTLTGSLPDFESNQNLKYMDISKNNISGAIPSSLENCTNLTEINLSMNKLTGLIPSELGNLVNLWILNFSHNNLEGPLPPQLSNCSKMDHFDVGFNYLNGSFPSSLRIWTRITTLILRENHFTGGIPDFLAEFDKLLELQLGGNLFGGEIPSSLGALQNLFYGLNLSANGLTGEVPLEIGKLKKLQSLDLSLNNLTGSINVLGELSSLVEVNISYNSFNGPVPERLVLNSNLSSFLGNPGVCVNCSSLEGLSCTKISYLKPCDHKPTNQKIQNGLSIGKIVIIELGSSIFLFLMLPALVYKYMRYRSKQKEKEKEAQLSTAIDREAHEIVGDEPLSSLVKQVMKATENLNDRHVIGRGAHGVVYKARVDPLSHEIFAVKKVLFTRNKRKGLSMQREIETVRKIKHRNLVKFEGFWMGKDYGLIFYPYMENGSLHDVLHERNPLPALEWSVRYKIAVGIAHGLAYLHHDCDPPIVHQDIKPKNILLDYEMEPHISDFGVAMLLNPSSSPTHKGSTYIVPGTVGYIAPENAYTIVQSGVSDVYSFGVVLLELITRKKVLDPSFLEKTTLVGWVRSIWRETRDVGKIIDPSLKKELSDLDVLDQVIKVLWIALLCSEKDPRKRPTMRNVIKLL 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0062 1111 SUPERFAMILY RNI-like 254 532 - -
Glsi07g0062 1111 SUPERFAMILY Protein kinase-like (PK-like) 816 1111 IPR011009 -
Glsi07g0062 1111 SUPERFAMILY L domain-like 441 743 - -
Glsi07g0062 1111 Gene3D Transferase(Phosphotransferase) domain 1 909 1111 - -
Glsi07g0062 1111 PANTHER LEUCINE RICH REPEAT KINASE 2 385 1109 - -
Glsi07g0062 1111 SUPERFAMILY L domain-like 22 286 - -
Glsi07g0062 1111 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Glsi07g0062 1111 SMART LRR_typ_2 183 207 IPR003591 -
Glsi07g0062 1111 SMART LRR_typ_2 351 375 IPR003591 -
Glsi07g0062 1111 SMART LRR_typ_2 399 423 IPR003591 -
Glsi07g0062 1111 SMART LRR_typ_2 542 566 IPR003591 -
Glsi07g0062 1111 SMART LRR_typ_2 303 327 IPR003591 -
Glsi07g0062 1111 SMART LRR_typ_2 208 230 IPR003591 -
Glsi07g0062 1111 SMART LRR_typ_2 135 159 IPR003591 -
Glsi07g0062 1111 SMART LRR_typ_2 87 111 IPR003591 -
Glsi07g0062 1111 SMART LRR_typ_2 663 686 IPR003591 -
Glsi07g0062 1111 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 179 270 - -
Glsi07g0062 1111 FunFam MDIS1-interacting receptor like kinase 2 isoform A 318 420 - -
Glsi07g0062 1111 ProSiteProfiles Protein kinase domain profile. 830 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0062 1111 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Glsi07g0062 1111 Gene3D Ribonuclease Inhibitor 253 308 IPR032675 -
Glsi07g0062 1111 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 448 731 - -
Glsi07g0062 1111 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 909 1111 - -
Glsi07g0062 1111 Gene3D Phosphorylase Kinase; domain 1 803 908 - -
Glsi07g0062 1111 ProSitePatterns Protein kinases ATP-binding region signature. 836 861 IPR017441 GO:0005524
Glsi07g0062 1111 Pfam Leucine rich repeat 496 555 IPR001611 GO:0005515
Glsi07g0062 1111 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Glsi07g0062 1111 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 19 178 - -
Glsi07g0062 1111 Gene3D Ribonuclease Inhibitor 25 139 IPR032675 -
Glsi07g0062 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Glsi07g0062 1111 Gene3D Ribonuclease Inhibitor 140 252 IPR032675 -
Glsi07g0062 1111 SMART serkin_6 830 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0062 1111 Pfam Protein kinase domain 833 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0062 1111 Gene3D Ribonuclease Inhibitor 471 732 IPR032675 -
Glsi07g0062 1111 Gene3D Ribonuclease Inhibitor 309 470 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0062 Glsi-ChrGlsi07 427052 430482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0062 11 1111 Receptor kinase-like Gene Family AT1G73080 51.485 0.0 1039
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi07g0062 Pkinase 3.2e-41 CL0016